RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 OASLQ15646 514 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 PPP2R5EQ16537 467 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 WASHC2DQ5SRD0 308 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 ANKRD54Q6NXT1 300 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 MSANTD2Q6P1R3 559 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 TMEM53Q6P2H8 277 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 KLC3Q6P597 504 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 NTAN1Q96AB6 310 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 SLC39A13Q96H72 371 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 PRICKLE1Q96MT3 831 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 HAPLN3Q96S86 360 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 MYADMQ96S97 322 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 MECRQ9BV79 373 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 NMUR2Q9GZQ4 415 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 EPB41L4BQ9H329 900 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 MTG2Q9H4K7 406 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 FCF1Q9Y324 198 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 PTPRDP23468 1912 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 PLXNA3P51805 1871 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 K7ERQ8 282 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 FCHO1O14526 889 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 BUD23O43709 281 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 AVILO75366 819 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 MT-CYBP00156 380 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 ZDHHC11BP0C7U3 371 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 TYRP14679 529 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 GKP32189 559 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 RPL22P35268 128 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 STK19P49842 368 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 SEC13P55735 322 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 SFSWAPQ12872 951 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 PDIA2Q13087 525 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 DCTN2Q13561 401 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 RASA2Q15283 850 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 SIX1Q15475 284 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 LRRC73Q5JTD7 316 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 PARM1Q6UWI2 310 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 RTL3Q8N8U3 475 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 ATP11CQ8NB49 1132 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 THAP11Q96EK4 314 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 CDX2Q99626 313 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 COMMD3-BMI1R4GMX3 469 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 ZDBF2Q9HCK1 2354 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 TBC1D3BA6NDS4 549 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 ANTXRLA6NF34 631 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 KDM1AO60341 852 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 MOSPD3O75425 235 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 T-ENOLP0DO92 83 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 SERPINB8P50452 374 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 HPCAP84074 193 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 KLF1Q13351 362 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 PDK3Q15120 406 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 LDLRAP1Q5SW96 308 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 KRT80Q6KB66 452 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 AMIGO2Q86SJ2 522 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 PALM2Q8IXS6 379 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 BPIFB1Q8TDL5 484 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 PLD4Q96BZ4 506 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 CFAP36Q96G28 342 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 LRRC3BQ96PB8 259 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 MRPL46Q9H2W6 279 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 PALMDQ9NP74 551 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 NINJ2Q9NZG7 142 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 GRHL1Q9NZI5 618 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 FAM92AA1XBS5 289 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 H3BSA7 217 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 ZBTB24O43167 697 aaPredicted RBP8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 ASMTLO95671 621 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 TTC4O95801 387 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 NUDT17P0C025 328 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 ZNF24P17028 368 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 NFKB1P19838 968 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 TGM2P21980 687 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 SSTR1P30872 391 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 BMP8BP34820 402 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 SLC10A7Q0GE19 358 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 UBAP2LQ14157 1087 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 ATXN7L2Q5T6C5 722 aaPredicted RBP8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 POTEHQ6S545 545 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 CES3Q6UWW8 571 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 PRR23BQ6ZRT6 265 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 CROCCP2Q86T23 111 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 APCDD1Q8J025 514 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 FLCNQ8NFG4 579 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 SEC14L1Q92503 715 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 ZNF75CPQ92670 426 aaPredicted RBP8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 FGF14Q92915 247 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 PPWD1Q96BP3 646 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 RIPOR3Q96MK2 946 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 LRRC3Q9BY71 257 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 LMAN2LQ9H0V9 348 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 ACSS2Q9NR19 701 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 ZDHHC18Q9NUE0 388 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 IL37Q9NZH6 218 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 SLC17A7Q9P2U7 560 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 CLUHO75153 1309 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 PRR23AA6NEV1 266 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 FAM187AA6NFU0 413 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 A6NL46 340 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 SRRM3A6NNA2 597 aaPredicted RBP8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms