RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 MRPL10Q7Z7H8 261 aaKnown RBP16.18■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 SCD5Q86SK9 330 aa16.18■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 NAT14Q8WUY8 206 aa16.18■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 PAWRQ96IZ0 340 aaKnown RBP16.18■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 GLT1D1Q96MS3 346 aa16.18■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 SMOC2Q9H3U7 446 aa16.18■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 NOL6Q9H6R4 1146 aaKnown RBP16.18■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 CYP4F12Q9HCS2 524 aa16.18■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 ABCC13Q9NSE7 274 aa16.18■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 MPP6Q9NZW5 540 aa16.18■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 AP4B1Q9Y6B7 739 aa16.18■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 TRIM38O00635 465 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 FBP2O00757 339 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 PQBP1O60828 265 aaKnown RBP16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 RNASEH2AO75792 299 aaKnown RBP16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 ETS2P15036 469 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 CCR1P32246 355 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 PSME3P61289 254 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 CDKL1Q00532 357 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 GK3PQ14409 553 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 SLC14A2Q15849 920 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 FAM219BQ5XKK7 198 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 TIGD7Q6NT04 549 aaPredicted RBP16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 KIAA0408Q6ZU52 694 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 RTL3Q8N8U3 475 aaKnown RBP16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 CCDC97Q96F63 343 aaPredicted RBP16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 PRKD2Q9BZL6 878 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 EPB41L1Q9H4G0 881 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 MEAF6Q9HAF1 191 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 ATP13A1Q9HD20 1204 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 NUDT5Q9UKK9 219 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 FIS1Q9Y3D6 152 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 TDRD15B5MCY1 1934 aaKnown RBP16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 TNFRSF10BO14763 440 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 B3GAT3O94766 335 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 PGM3O95394 542 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 TCN1P20061 433 aaPredicted RBP16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 LEPRP48357 1165 aaKnown RBP16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 KPNA2P52292 529 aaKnown RBP16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 SLC12A2P55011 1212 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 LRP8Q14114 963 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 PTK2BQ14289 1009 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 IHHQ14623 411 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 PCSK7Q16549 785 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 RNF135Q8IUD6 432 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 PCDH20Q8N6Y1 951 aaKnown RBP16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 CATSPER1Q8NEC5 780 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 HASPINQ8TF76 798 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 ARMC5Q96C12 935 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 PPP1R2P1Q96PQ5 205 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 TRIM62Q9BVG3 475 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 NMUR1Q9HB89 426 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 ARNT2Q9HBZ2 717 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 TBC1D13Q9NVG8 400 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 DNAAF2Q9NVR5 837 aaKnown RBP16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 OSER1Q9NX31 292 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 SARDHQ9UL12 918 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 HS3ST4Q9Y661 456 aa16.17■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 SMIM31A0A1B0GVY4 71 aa16.16■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 E7ENX8 843 aa16.16■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 E9PAM4 449 aa16.16■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 M0QZ92 97 aa16.16■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 M0QZQ0 153 aa16.16■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 IPO13O94829 963 aaKnown RBP16.16■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 POMCP01189 267 aa16.16■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 TFAP2AP05549 437 aa16.16■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 SLC5A3P53794 718 aa16.16■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 MYBPC1Q00872 1141 aa16.16■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 LSAMPQ13449 338 aa16.16■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 PPP1R3AQ16821 1122 aa16.16■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 FAM83EQ2M2I3 478 aa16.16■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 EML3Q32P44 896 aa16.16■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 CUZD1Q86UP6 607 aa16.16■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 METTL23Q86XA0 190 aa16.16■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 PCSK9Q8NBP7 692 aaKnown RBP16.16■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 ANKRD49Q8WVL7 239 aa16.16■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 UBXN10Q96LJ8 280 aa16.16■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 PRICKLE1Q96MT3 831 aaPredicted RBP16.16■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 MRPL1Q9BYD6 325 aaKnown RBP16.16■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 AGO3Q9H9G7 860 aaKnown RBP16.16■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 IPO11Q9UI26 975 aaKnown RBP16.16■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 OGDHLQ9ULD0 1010 aa16.16■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 COMMD3-BMI1R4GMX3 469 aa16.16■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 MYO16Q9Y6X6 1858 aa16.16■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 WISP3O95389 354 aaPredicted RBP16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 LTA4HP09960 611 aaKnown RBP16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 HDCP19113 662 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 IL23RQ5VWK5 629 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 ISLR2Q6UXK2 745 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 SPATA24Q86W54 205 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 OR13J1Q8NGT2 312 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 ASB9Q96DX5 294 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 FAR2Q96K12 515 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 SLC25A51Q9H1U9 297 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 Q9H521 79 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 CACNA2D2Q9NY47 1150 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 ADA2Q9NZK5 511 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 PHF24Q9UPV7 400 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 TET1Q8NFU7 2136 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 HEATR9A2RTY3 570 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms