RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 DDX6P26196 483 aaKnown RBP eCLIP6.96□□□□□ -1.3
USP39-219ENST00000496047 PTPN4P29074 926 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 PMLP29590 882 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 SLC1A2P43004 574 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 PGFP49763 221 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 KCNQ1P51787 676 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 EPHB1P54762 984 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 RHOAP61586 193 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 NAA20P61599 178 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 NCALDP61601 193 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 SMAD3P84022 425 aaKnown RBP6.96□□□□□ -1.3
USP39-219ENST00000496047 MXRA7P84157 204 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 OCRLQ01968 901 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 KRT72Q14CN4 511 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 CNGA3Q16281 694 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 TCTN1Q2MV58 587 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 CTC1Q2NKJ3 1217 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 DNAL1Q4LDG9 190 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 FAM91A1Q658Y4 838 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 MBLAC2Q68D91 279 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 NADSYN1Q6IA69 706 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 LRRC8EQ6NSJ5 796 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 RETSATQ6NUM9 610 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 ESRP1Q6NXG1 681 aaKnown RBP6.96□□□□□ -1.3
USP39-219ENST00000496047 CYB5D1Q6P9G0 228 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 RFWD3Q6PCD5 774 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 PSRC1Q6PGN9 363 aaPredicted RBP6.96□□□□□ -1.3
USP39-219ENST00000496047 ZYG11AQ6WRX3 759 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 CDHR3Q6ZTQ4 885 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 ACAD11Q709F0 780 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 RTL10Q7L3V2 364 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 VASH1Q7L8A9 365 aaPredicted RBP6.96□□□□□ -1.3
USP39-219ENST00000496047 KDELC2Q7Z4H8 507 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 GLT6D1Q7Z4J2 308 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 RAB44Q7Z6P3 723 aaPredicted RBP6.96□□□□□ -1.3
USP39-219ENST00000496047 CMC1Q7Z7K0 106 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 CIR1Q86X95 450 aaPredicted RBP6.96□□□□□ -1.3
USP39-219ENST00000496047 SLC22A9Q8IVM8 553 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 MFN1Q8IWA4 741 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 UNC5BQ8IZJ1 945 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 CARNMT1Q8N4J0 409 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 FITM2Q8N6M3 262 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 EFHBQ8N7U6 833 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 PLPP7Q8NBV4 271 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 OR6P1Q8NGX9 317 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 RFWD2Q8NHY2 731 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 BRSK1Q8TDC3 778 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 BLOC1S5Q8TDH9 187 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 NSL1Q96IY1 281 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 FAR2Q96K12 515 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 TMEM237Q96Q45 408 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 PSKH2Q96QS6 385 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 AGAP2Q99490 1192 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 OCSTAMPQ9BR26 566 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 C2orf49Q9BVC5 232 aaPredicted RBP6.96□□□□□ -1.3
USP39-219ENST00000496047 KLF16Q9BXK1 252 aaPredicted RBP6.96□□□□□ -1.3
USP39-219ENST00000496047 ACE2Q9BYF1 805 aaPredicted RBP6.96□□□□□ -1.3
USP39-219ENST00000496047 LRMDAQ9H2I8 198 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 MRPL46Q9H2W6 279 aaKnown RBP6.96□□□□□ -1.3
USP39-219ENST00000496047 NOL6Q9H6R4 1146 aaKnown RBP6.96□□□□□ -1.3
USP39-219ENST00000496047 PDFQ9HBH1 243 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 POPDC3Q9HBV1 291 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 EML4Q9HC35 981 aaKnown RBP6.96□□□□□ -1.3
USP39-219ENST00000496047 IL23AQ9NPF7 189 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 ASAH2Q9NR71 780 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 CATSPERZQ9NTU4 200 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 INTS10Q9NVR2 710 aaKnown RBP6.96□□□□□ -1.3
USP39-219ENST00000496047 TOR4AQ9NXH8 423 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 IL1RAPL1Q9NZN1 696 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 NCKIPSDQ9NZQ3 722 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 SLC17A6Q9P2U8 582 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 HEY2Q9UBP5 337 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 VTI1BQ9UEU0 232 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 DPP7Q9UHL4 492 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 LNPEPQ9UIQ6 1025 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 GGT7Q9UJ14 662 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 ZMYM5Q9UJ78 669 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 VPS28Q9UK41 221 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 RPL26L1Q9UNX3 145 aaKnown RBP6.96□□□□□ -1.3
USP39-219ENST00000496047 CHKBQ9Y259 395 aa6.96□□□□□ -1.3
USP39-219ENST00000496047 MRPL42Q9Y6G3 142 aaKnown RBP6.96□□□□□ -1.3
USP39-219ENST00000496047 ATG2AQ2TAZ0 1938 aa6.95□□□□□ -1.3
USP39-219ENST00000496047 DOCK6Q96HP0 2047 aa6.95□□□□□ -1.3
USP39-219ENST00000496047 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.95□□□□□ -1.3
USP39-219ENST00000496047 LOC285095A0A1B0GVY8 99 aa6.95□□□□□ -1.3
USP39-219ENST00000496047 TTC24A2A3L6 582 aaPredicted RBP6.95□□□□□ -1.3
USP39-219ENST00000496047 HMX2A2RU54 273 aa6.95□□□□□ -1.3
USP39-219ENST00000496047 SPECC1L-ADORA2AF8WAN1 911 aa6.95□□□□□ -1.3
USP39-219ENST00000496047 CBX4O00257 560 aa6.95□□□□□ -1.3
USP39-219ENST00000496047 TRAFD1O14545 582 aaPredicted RBP6.95□□□□□ -1.3
USP39-219ENST00000496047 ADAM12O43184 909 aa6.95□□□□□ -1.3
USP39-219ENST00000496047 TBL1XO60907 577 aa6.95□□□□□ -1.3
USP39-219ENST00000496047 SMIM24O75264 130 aa6.95□□□□□ -1.3
USP39-219ENST00000496047 CIB2O75838 187 aa6.95□□□□□ -1.3
USP39-219ENST00000496047 FGF18O76093 207 aa6.95□□□□□ -1.3
USP39-219ENST00000496047 GJB5O95377 273 aa6.95□□□□□ -1.3
USP39-219ENST00000496047 SEC24AO95486 1093 aa6.95□□□□□ -1.3
USP39-219ENST00000496047 IGSF6O95976 241 aa6.95□□□□□ -1.3
USP39-219ENST00000496047 PEX11BO96011 259 aa6.95□□□□□ -1.3
USP39-219ENST00000496047 AVPP01185 164 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms