RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 HLA-BQ31612 363 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 UAP1L1Q3KQV9 507 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 USP45Q70EL2 814 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 NDUFAF2Q8N183 169 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 TTC13Q8NBP0 860 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 FAM174AQ8TBP5 190 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 PIH1D2Q8WWB5 315 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 IMP4Q96G21 291 aaKnown RBP16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 TEKT5Q96M29 485 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 RBM15Q96T37 977 aaKnown RBP eCLIP16.36■□□□□ 0.219e-7■■□□□ 13.6
MSH5-SAPCD1-206ENST00000491552 VAT1Q99536 393 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 FAM118BQ9BPY3 351 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 SLC25A51Q9H1U9 297 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 GLOD4Q9HC38 313 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 DLL3Q9NYJ7 618 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 KLHL8Q9P2G9 620 aaPredicted RBP16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 B4GALT6Q9UBX8 382 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 CHKBQ9Y259 395 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 COQ6Q9Y2Z9 468 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 HS3ST3A1Q9Y663 406 aa16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 PTPRZ1P23471 2315 aaPredicted RBP16.36■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 TRPM6Q9BX84 2022 aa16.35■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 A6NNZ2 444 aa16.35■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 FPGTO14772 594 aa16.35■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 THEGLP0DJG4 465 aa16.35■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 RBP3P10745 1247 aa16.35■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 CYP2A6P11509 494 aaPredicted RBP16.35■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 RBL1P28749 1068 aa16.35■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 VIPR1P32241 457 aa16.35■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 PUM1Q14671 1186 aaKnown RBP eCLIP16.35■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 SLC14A2Q15849 920 aa16.35■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 ZNF423Q2M1K9 1284 aa16.35■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 LIPIQ6XZB0 460 aa16.35■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 KYAT3Q6YP21 454 aaKnown RBP16.35■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 PTAR1Q7Z6K3 402 aaPredicted RBP16.35■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 ABI3BPQ7Z7G0 1075 aa16.35■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 KLHDC7BQ96G42 594 aa16.35■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 MCCC1Q96RQ3 725 aaPredicted RBP16.35■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 KLF6Q99612 283 aaPredicted RBP16.35■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 FERMT1Q9BQL6 677 aa16.35■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 CARD9Q9H257 536 aa16.35■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 C10orf88Q9H8K7 445 aa16.35■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 IL21RQ9HBE5 538 aa16.35■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 PCDH9Q9HC56 1237 aa16.35■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 GDF3Q9NR23 364 aa16.35■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 PPIL1Q9Y3C6 166 aa16.35■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 NPIPB15A6NHN6 443 aaPredicted RBP16.34■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 A8MX80 341 aa16.34■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 KCNK3O14649 394 aa16.34■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 LZTS3O60299 673 aaPredicted RBP16.34■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 DFNA5O60443 496 aa16.34■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 ZNF189O75820 626 aaPredicted RBP16.34■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 PRLP01236 227 aa16.34■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 CTPS1P17812 591 aa16.34■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 NFKB1P19838 968 aa16.34■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 CD68P34810 354 aaPredicted RBP16.34■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 IGFALSP35858 605 aa16.34■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 RPL26P61254 145 aaKnown RBP16.34■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 AGERQ15109 404 aa16.34■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 DARS2Q6PI48 645 aaKnown RBP16.34■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 PID1Q7Z2X4 250 aa16.34■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 REXO1L1PQ8IX06 675 aa16.34■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 ZNF567Q8N184 647 aa16.34■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 TP53I13Q8NBR0 393 aaPredicted RBP16.34■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 LPCAT1Q8NF37 534 aa16.34■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 OR13H1Q8NG92 308 aa16.34■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 SPATA22Q8NHS9 363 aa16.34■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 TADA1Q96BN2 335 aa16.34■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 CENPTQ96BT3 561 aa16.34■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 SCRN2Q96FV2 425 aa16.34■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 BMFQ96LC9 184 aa16.34■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 TRHDEQ9UKU6 1024 aa16.34■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 RPL26L1Q9UNX3 145 aaKnown RBP16.34■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 FNDC3AQ9Y2H6 1198 aaKnown RBP16.34■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 TP53BP1Q12888 1972 aaPredicted RBP16.34■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 DOCK9Q9BZ29 2069 aa16.33■□□□□ 0.21
MSH5-SAPCD1-206ENST00000491552 A0A0J9YYE9 177 aa16.33■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 TCRBV7S2A1N4TA0A589 114 aa16.33■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 POM121BA6NF01 834 aa16.33■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 HEXIM1O94992 359 aaKnown RBP16.33■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 TRBC1P01850 177 aa16.33■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 ALPIP09923 528 aa16.33■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 ZNF883P0CG24 379 aa16.33■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 LHCGRP22888 699 aa16.33■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 RABIFP47224 123 aa16.33■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 CCT8P50990 548 aa16.33■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 CCDC173Q0VFZ6 552 aa16.33■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 ARHGEF7Q14155 803 aa16.33■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 LRRC14Q15048 493 aa16.33■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 IRF4Q15306 451 aa16.33■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 CNGA3Q16281 694 aa16.33■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 Q6ZSR6 202 aa16.33■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 SPATS2Q86XZ4 545 aaKnown RBP16.33■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 SLC13A5Q86YT5 568 aaPredicted RBP16.33■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 OXR1Q8N573 874 aa16.33■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 ELF4Q99607 663 aaPredicted RBP16.33■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 TLR10Q9BXR5 811 aa16.33■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 ADGRE3Q9BY15 652 aa16.33■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 MBNL1Q9NR56 388 aaKnown RBP16.33■□□□□ 0.2
MSH5-SAPCD1-206ENST00000491552 TM7SF3Q9NS93 570 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms