RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 CCNG2Q16589 344 aa5□□□□□ -1.61
HMGB1P38-201ENST00000490557 LRCH2Q5VUJ6 765 aa5□□□□□ -1.61
HMGB1P38-201ENST00000490557 ZC3HC1Q86WB0 502 aaKnown RBP5□□□□□ -1.61
HMGB1P38-201ENST00000490557 DSELQ8IZU8 1212 aa5□□□□□ -1.61
HMGB1P38-201ENST00000490557 ZBTB2Q8N680 514 aa5□□□□□ -1.61
HMGB1P38-201ENST00000490557 AGBL3Q8NEM8 1001 aa5□□□□□ -1.61
HMGB1P38-201ENST00000490557 TDRD7Q8NHU6 1098 aaKnown RBP5□□□□□ -1.61
HMGB1P38-201ENST00000490557 KCNG4Q8TDN1 519 aa5□□□□□ -1.61
HMGB1P38-201ENST00000490557 PABPC5Q96DU9 382 aaKnown RBP5□□□□□ -1.61
HMGB1P38-201ENST00000490557 PHF21BQ96EK2 531 aa5□□□□□ -1.61
HMGB1P38-201ENST00000490557 MED30Q96HR3 178 aa5□□□□□ -1.61
HMGB1P38-201ENST00000490557 ZNF479Q96JC4 524 aa5□□□□□ -1.61
HMGB1P38-201ENST00000490557 PIP5K1AQ99755 562 aa5□□□□□ -1.61
HMGB1P38-201ENST00000490557 UBA5Q9GZZ9 404 aa5□□□□□ -1.61
HMGB1P38-201ENST00000490557 USP44Q9H0E7 712 aa5□□□□□ -1.61
HMGB1P38-201ENST00000490557 BRF2Q9HAW0 419 aa5□□□□□ -1.61
HMGB1P38-201ENST00000490557 SLC6A13Q9NSD5 602 aa5□□□□□ -1.61
HMGB1P38-201ENST00000490557 ORC3Q9UBD5 711 aaPredicted RBP5□□□□□ -1.61
HMGB1P38-201ENST00000490557 RCOR1Q9UKL0 485 aa5□□□□□ -1.61
HMGB1P38-201ENST00000490557 AGO1Q9UL18 857 aaKnown RBP5□□□□□ -1.61
HMGB1P38-201ENST00000490557 MKLN1Q9UL63 735 aa5□□□□□ -1.61
HMGB1P38-201ENST00000490557 ERVK-11Q9UQG0 969 aa5□□□□□ -1.61
HMGB1P38-201ENST00000490557 NFE2L3Q9Y4A8 694 aa5□□□□□ -1.61
HMGB1P38-201ENST00000490557 IGKV2D-30A0A075B6S6 120 aa4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 A0A1W2PQM1 296 aa4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 B4E171 279 aa4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 SMAD6O43541 496 aaKnown RBP4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 TMEM63AO94886 807 aa4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 ITGAXP20702 1163 aa4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 AGAP20933 346 aa4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 TNFAIP3P21580 790 aa4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 CDAP32320 146 aa4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 STX2P32856 288 aa4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 MAN1A1P33908 653 aa4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 TSPAN7P41732 249 aa4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 LTBQ06643 244 aa4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 DRAP1Q14919 205 aaPredicted RBP4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 TBCEQ15813 527 aaPredicted RBP4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 DPCR1Q3MIW9 517 aa4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 MMEL1Q495T6 779 aa4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 FBXO46Q6PJ61 603 aaPredicted RBP4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 TSSK4Q6SA08 328 aa4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 CCDC129Q6ZRS4 1044 aa4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 LINGO2Q7L985 606 aa4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 SPATA2LQ8IUW3 424 aaPredicted RBP4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 HUS1BQ8NHY5 278 aa4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 FAM149B1Q96BN6 582 aa4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 MARK4Q96L34 752 aa4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 TM6SF1Q9BZW5 370 aa4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 PLEKHA4Q9H4M7 779 aa4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 GPR108Q9NPR9 543 aa4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 ASAH2Q9NR71 780 aa4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 DIAPH3Q9NSV4 1193 aa4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 LIMA1Q9UHB6 759 aaKnown RBP4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 FBXO9Q9UK97 447 aaPredicted RBP4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 INTS6Q9UL03 887 aaKnown RBP4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 CDC14AQ9UNH5 594 aa4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 SLC45A1Q9Y2W3 748 aa4.99□□□□□ -1.61
HMGB1P38-201ENST00000490557 hDV102S1A0JD36 115 aa4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 TMEM202A6NGA9 273 aa4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 NPIPB15A6NHN6 443 aaPredicted RBP4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 AKR1B15C9JRZ8 316 aaPredicted RBP4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 ZIC3O60481 467 aa4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 HNRNPCL1O60812 293 aaKnown RBP4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 CENPBP07199 599 aaPredicted RBP4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 CHMP24386 653 aa4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 TKTP29401 623 aaKnown RBP4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 SHMT1P34896 483 aa4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 BSGP35613 385 aa4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 NANOS2P60321 138 aaKnown RBP4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 RPS3AP61247 264 aaKnown RBP4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 OLR1P78380 273 aa4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 TMEM115Q12893 351 aaPredicted RBP4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 NAE1Q13564 534 aa4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 FGFBP1Q14512 234 aa4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 KRT32Q14532 448 aa4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 COL28A1Q2UY09 1125 aa4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 ZNF517Q6ZMY9 492 aaPredicted RBP4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 TMTC3Q6ZXV5 915 aa4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 SLC35F3Q8IY50 421 aa4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 PPHLN1Q8NEY8 458 aaKnown RBP4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 TMED6Q8WW62 240 aa4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 WASF1Q92558 559 aa4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 INTS12Q96CB8 462 aaKnown RBP4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 SLITRK1Q96PX8 696 aa4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 OR1F2PQ96R84 312 aa4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 KXD1Q9BQD3 176 aa4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 NDST4Q9H3R1 872 aa4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 KIF9Q9HAQ2 790 aa4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 KRT84Q9NSB2 600 aa4.98□□□□□ -1.61
HMGB1P38-201ENST00000490557 ATXN2Q99700 1313 aaKnown RBP4.97□□□□□ -1.61
HMGB1P38-201ENST00000490557 J3KR12 359 aa4.97□□□□□ -1.61
HMGB1P38-201ENST00000490557 HSPA12AO43301 675 aa4.97□□□□□ -1.61
HMGB1P38-201ENST00000490557 PAPSS2O95340 614 aaPredicted RBP4.97□□□□□ -1.61
HMGB1P38-201ENST00000490557 CLEC3BP05452 202 aa4.97□□□□□ -1.61
HMGB1P38-201ENST00000490557 FCGR1AP12314 374 aa4.97□□□□□ -1.61
HMGB1P38-201ENST00000490557 NFKBIAP25963 317 aa4.97□□□□□ -1.61
HMGB1P38-201ENST00000490557 ARL3P36405 182 aa4.97□□□□□ -1.61
HMGB1P38-201ENST00000490557 ZXDBP98169 803 aa4.97□□□□□ -1.61
HMGB1P38-201ENST00000490557 DDR1Q08345 913 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms