RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 SPOCK2Q92563 424 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 CCDC28BQ9BUN5 200 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 PAX3P23760 479 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 CDK18Q07002 472 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 PSMD5Q16401 504 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 GK5Q6ZS86 529 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 FAM35AQ86V20 835 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 TDRPQ86YL5 185 aa16.51■□□□□ 0.23
COL7A1-210ENST00000487017 ANKDD1BA6NHY2 528 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 KPNA5O15131 536 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 SLC22A3O75751 556 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 MTA2O94776 668 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 FGF1P05230 155 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 COL6A2P12110 1019 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 ITGA2P17301 1181 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 RPL9P32969 192 aaKnown RBP16.5■□□□□ 0.23
COL7A1-210ENST00000487017 HIRAP54198 1017 aaPredicted RBP16.5■□□□□ 0.23
COL7A1-210ENST00000487017 HADHBP55084 474 aaKnown RBP16.5■□□□□ 0.23
COL7A1-210ENST00000487017 WNT3AP56704 352 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 HECTD3Q5T447 861 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 DDI2Q5TDH0 399 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 GATAD2AQ86YP4 633 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 DEPDC4Q8N2C3 294 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 PLD5Q8N7P1 536 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 KBTBD8Q8NFY9 601 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 S100ZQ8WXG8 99 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 CD101Q93033 1021 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 ST6GALNAC4Q9H4F1 302 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 ENTPD4Q9Y227 616 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 CILPO75339 1184 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 IL6P05231 212 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 ACADMP11310 421 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 RFX4Q33E94 735 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 MTX3Q5HYI7 312 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 BRMS1LQ5PSV4 323 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 BSNDQ8WZ55 320 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 UBE2E3Q969T4 207 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 GINS4Q9BRT9 223 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 MYPNQ86TC9 1320 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 RPTORQ8N122 1335 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 DISP2A7MBM2 1401 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 FOXO6A8MYZ6 492 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 FARP2O94887 1054 aaPredicted RBP16.5■□□□□ 0.23
COL7A1-210ENST00000487017 CCNE2O96020 404 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 LPOP22079 712 aaPredicted RBP16.5■□□□□ 0.23
COL7A1-210ENST00000487017 GALNT3Q14435 633 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 CLPTM1LQ96KA5 538 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 OSBPL7Q9BZF2 842 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 CLEC4MQ9H2X3 399 aaPredicted RBP16.5■□□□□ 0.23
COL7A1-210ENST00000487017 ZNF624Q9P2J8 865 aaPredicted RBP16.5■□□□□ 0.23
COL7A1-210ENST00000487017 MAGEL2Q9UJ55 1249 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 PCDHGC3Q9UN70 934 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 MYO5BQ9ULV0 1848 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 LSM3P62310 102 aaKnown RBP16.5■□□□□ 0.23
COL7A1-210ENST00000487017 C9orf57Q5W0N0 161 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 DEFB132Q7Z7B7 95 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 B3GNT5Q9BYG0 378 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 A0A0J9YYE9 177 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 MOXD2PA6NHM9 499 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 SIN3BO75182 1162 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 JAK1P23458 1154 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 NTSP30990 170 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 SLC4A11Q8NBS3 891 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 NLNQ9BYT8 704 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 GLOD4Q9HC38 313 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 TMPRSS4Q9NRS4 437 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 DPP7Q9UHL4 492 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 ANGPT4Q9Y264 503 aa16.5■□□□□ 0.23
COL7A1-210ENST00000487017 GUCY1B2O75343 617 aa16.49■□□□□ 0.23
COL7A1-210ENST00000487017 ARF4P18085 180 aaPredicted RBP16.49■□□□□ 0.23
COL7A1-210ENST00000487017 SNRPD1P62314 119 aaKnown RBP16.49■□□□□ 0.23
COL7A1-210ENST00000487017 SGCGQ13326 291 aa16.49■□□□□ 0.23
COL7A1-210ENST00000487017 PERM1Q5SV97 790 aa16.49■□□□□ 0.23
COL7A1-210ENST00000487017 ZNF572Q7Z3I7 529 aaPredicted RBP16.49■□□□□ 0.23
COL7A1-210ENST00000487017 IFNLR1Q8IU57 520 aaPredicted RBP16.49■□□□□ 0.23
COL7A1-210ENST00000487017 TRAPPC5Q8IUR0 188 aa16.49■□□□□ 0.23
COL7A1-210ENST00000487017 POMGNT2Q8NAT1 580 aa16.49■□□□□ 0.23
COL7A1-210ENST00000487017 ZHX1-C8orf76Q96EF9 292 aa16.49■□□□□ 0.23
COL7A1-210ENST00000487017 SLC47A1Q96FL8 570 aa16.49■□□□□ 0.23
COL7A1-210ENST00000487017 Q96MT0 163 aa16.49■□□□□ 0.23
COL7A1-210ENST00000487017 QKIQ96PU8 341 aaKnown RBP eCLIP16.49■□□□□ 0.23
COL7A1-210ENST00000487017 VPS35Q96QK1 796 aa16.49■□□□□ 0.23
COL7A1-210ENST00000487017 KCTD15Q96SI1 283 aaPredicted RBP16.49■□□□□ 0.23
COL7A1-210ENST00000487017 MANSC4A6NHS7 340 aaPredicted RBP16.49■□□□□ 0.23
COL7A1-210ENST00000487017 PIRTP0C851 137 aa16.49■□□□□ 0.23
COL7A1-210ENST00000487017 MZT2AQ6P582 158 aa16.49■□□□□ 0.23
COL7A1-210ENST00000487017 TPGS1Q6ZTW0 290 aa16.49■□□□□ 0.23
COL7A1-210ENST00000487017 DET1Q7L5Y6 550 aa16.49■□□□□ 0.23
COL7A1-210ENST00000487017 GPR180Q86V85 440 aa16.49■□□□□ 0.23
COL7A1-210ENST00000487017 TBC1D21Q8IYX1 336 aa16.49■□□□□ 0.23
COL7A1-210ENST00000487017 FAM47BQ8NA70 645 aa16.49■□□□□ 0.23
COL7A1-210ENST00000487017 LINGO1Q96FE5 620 aa16.49■□□□□ 0.23
COL7A1-210ENST00000487017 KPNA3O00505 521 aaPredicted RBP16.49■□□□□ 0.23
COL7A1-210ENST00000487017 SNPHO15079 494 aa16.49■□□□□ 0.23
COL7A1-210ENST00000487017 POLR2EP19388 210 aaKnown RBP16.49■□□□□ 0.23
COL7A1-210ENST00000487017 CDH13P55290 713 aa16.49■□□□□ 0.23
COL7A1-210ENST00000487017 TEX44Q53QW1 395 aa16.49■□□□□ 0.23
COL7A1-210ENST00000487017 ZC3H7AQ8IWR0 971 aaKnown RBP16.49■□□□□ 0.23
COL7A1-210ENST00000487017 KLHL31Q9H511 634 aa16.49■□□□□ 0.23
COL7A1-210ENST00000487017 NOL11Q9H8H0 719 aaKnown RBP16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms