RNA–Protein interactions for RNA: ENST00000486991.1

NR1H3-223, Transcript of nuclear receptor subfamily 1 group H member 3, human

TSL 4

Gene NR1H3, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1H3-223	ENST00000486991	FAM71D	Q8N9W8	422 aa		13.21	□□□□□ -0.29
NR1H3-223	ENST00000486991	ATP11C	Q8NB49	1132 aa		13.21	□□□□□ -0.29
NR1H3-223	ENST00000486991	LRIG1	Q96JA1	1093 aa		13.21	□□□□□ -0.29
NR1H3-223	ENST00000486991	ZNF599	Q96NL3	588 aa		13.21	□□□□□ -0.29
NR1H3-223	ENST00000486991	BBC3	Q96PG8	261 aa	Predicted RBP	13.21	□□□□□ -0.29
NR1H3-223	ENST00000486991	KRT12	Q99456	494 aa		13.21	□□□□□ -0.29
NR1H3-223	ENST00000486991	L2HGDH	Q9H9P8	463 aa		13.21	□□□□□ -0.29
NR1H3-223	ENST00000486991	EBF2	Q9HAK2	575 aa		13.21	□□□□□ -0.29
NR1H3-223	ENST00000486991	FZD4	Q9ULV1	537 aa		13.21	□□□□□ -0.29
NR1H3-223	ENST00000486991	DRG1	Q9Y295	367 aa	Known RBP	13.21	□□□□□ -0.29
NR1H3-223	ENST00000486991	GOLGA4	Q13439	2230 aa	Known RBP	13.21	□□□□□ -0.29
NR1H3-223	ENST00000486991	C1QTNF3-AMACR	E9PGA6	284 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	PLK4	O00444	970 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	WNT9A	O14904	365 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	FLRT2	O43155	660 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	ZNF189	O75820	626 aa	Predicted RBP	13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	TMCC1	O94876	653 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	DKK1	O94907	266 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	PEX11B	O96011	259 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	IFNB1	P01574	187 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	CD27	P26842	260 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	MMP13	P45452	471 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	SERPINH1	P50454	418 aa	Known RBP	13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	RENBP	P51606	427 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	ADPRH	P54922	357 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	GDF10	P55107	478 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	IFI35	P80217	286 aa	Predicted RBP	13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	SLC10A7	Q0GE19	358 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	ZBTB17	Q13105	803 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	ZNF235	Q14590	738 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	KIAA0895L	Q68EN5	471 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	DHRS13	Q6UX07	377 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	GATAD2A	Q86YP4	633 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	BBS5	Q8N3I7	341 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	CCDC89	Q8N998	374 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	OR2A12	Q8NGT7	310 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	ATL2	Q8NHH9	583 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	GRK7	Q8WTQ7	553 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	OR8D1	Q8WZ84	308 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	MAML1	Q92585	1016 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	FATE1	Q969F0	183 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	CDC6	Q99741	560 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	CINP	Q9BW66	212 aa	Predicted RBP	13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	NEUROG2	Q9H2A3	272 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	USP29	Q9HBJ7	922 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	NT5M	Q9NPB1	228 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	RBM22	Q9NW64	420 aa	Known RBP eCLIP	13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	KLHL8	Q9P2G9	620 aa	Predicted RBP	13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	SEPT3	Q9UH03	358 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	PPM1H	Q9ULR3	514 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	FCF1	Q9Y324	198 aa	Known RBP	13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	TTLL3	Q9Y4R7	772 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	PCDHGB2	Q9Y5G2	931 aa		13.2	□□□□□ -0.3
NR1H3-223	ENST00000486991	APC2	O95996	2303 aa		13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	ALOX15B	O15296	676 aa		13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	RNASEH2A	O75792	299 aa	Known RBP	13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	IL1B	P01584	269 aa		13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	WNT1	P04628	370 aa		13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	PTPN3	P26045	913 aa		13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	STIP1	P31948	543 aa	Known RBP	13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	CTSK	P43235	329 aa		13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	RHOA	P61586	193 aa		13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	ITK	Q08881	620 aa		13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	WASHC5	Q12768	1159 aa		13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	CAMK2B	Q13554	666 aa		13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	RFTN1	Q14699	578 aa	Predicted RBP	13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	SUZ12	Q15022	739 aa	Known RBP	13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	CYTH1	Q15438	398 aa		13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	KCTD19	Q17RG1	926 aa	Predicted RBP	13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	INO80D	Q53TQ3	878 aa	Predicted RBP	13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	AGBL4	Q5VU57	503 aa		13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	C22orf39	Q6P5X5	142 aa		13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	NCEH1	Q6PIU2	408 aa		13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	PRUNE1	Q86TP1	453 aa		13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	CASKIN2	Q8WXE0	1202 aa		13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	SLC6A18	Q96N87	628 aa		13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	RUNDC3B	Q96NL0	473 aa		13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	AGAP3	Q96P47	875 aa		13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	IL12RB2	Q99665	862 aa		13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	KDM4C	Q9H3R0	1056 aa		13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	AMACR	Q9UHK6	382 aa		13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	FEZ2	Q9UHY8	353 aa	Predicted RBP	13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	TDRD6	O60522	2096 aa	Known RBP	13.19	□□□□□ -0.3
NR1H3-223	ENST00000486991	CXorf51A	A0A1B0GTR3	108 aa		13.18	□□□□□ -0.3
NR1H3-223	ENST00000486991	C5orf60	A6NFR6	353 aa		13.18	□□□□□ -0.3
NR1H3-223	ENST00000486991	SLC7A4	O43246	635 aa		13.18	□□□□□ -0.3
NR1H3-223	ENST00000486991	BNIP3L	O60238	219 aa		13.18	□□□□□ -0.3
NR1H3-223	ENST00000486991	ECEL1	O95672	775 aa		13.18	□□□□□ -0.3
NR1H3-223	ENST00000486991	GAS8	O95995	478 aa		13.18	□□□□□ -0.3
NR1H3-223	ENST00000486991	HLA-DQB2	P05538	268 aa		13.18	□□□□□ -0.3
NR1H3-223	ENST00000486991	ETS1	P14921	441 aa		13.18	□□□□□ -0.3
NR1H3-223	ENST00000486991	NUDT1	P36639	197 aa		13.18	□□□□□ -0.3
NR1H3-223	ENST00000486991	RECQL	P46063	649 aa	Predicted RBP	13.18	□□□□□ -0.3
NR1H3-223	ENST00000486991	GRIA4	P48058	902 aa		13.18	□□□□□ -0.3
NR1H3-223	ENST00000486991	PPP2CB	P62714	309 aa		13.18	□□□□□ -0.3
NR1H3-223	ENST00000486991	PPP2CA	P67775	309 aa		13.18	□□□□□ -0.3
NR1H3-223	ENST00000486991	MRPS25	P82663	173 aa	Known RBP	13.18	□□□□□ -0.3
NR1H3-223	ENST00000486991	DR1	Q01658	176 aa		13.18	□□□□□ -0.3
NR1H3-223	ENST00000486991	CNTN1	Q12860	1018 aa		13.18	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms