RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 PPP1R15BQ5SWA1 713 aa19.08■□□□□ 0.65
CCDC88B-204ENST00000463837 LRP10Q7Z4F1 713 aa19.08■□□□□ 0.65
CCDC88B-204ENST00000463837 RIOX2Q8IUF8 465 aa19.08■□□□□ 0.65
CCDC88B-204ENST00000463837 OFCC1Q8IZS5 231 aa19.08■□□□□ 0.65
CCDC88B-204ENST00000463837 SERAC1Q96JX3 654 aa19.08■□□□□ 0.65
CCDC88B-204ENST00000463837 IKZF4Q9H2S9 585 aa19.08■□□□□ 0.65
CCDC88B-204ENST00000463837 ARL15Q9NXU5 204 aa19.08■□□□□ 0.65
CCDC88B-204ENST00000463837 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.08■□□□□ 0.65
CCDC88B-204ENST00000463837 MDM4O15151 490 aa19.08■□□□□ 0.64
CCDC88B-204ENST00000463837 PLIN3O60664 434 aa19.08■□□□□ 0.64
CCDC88B-204ENST00000463837 RPL3P39023 403 aaKnown RBP19.08■□□□□ 0.64
CCDC88B-204ENST00000463837 INHBEP58166 350 aa19.08■□□□□ 0.64
CCDC88B-204ENST00000463837 ALFQ53S48 1182 aa19.08■□□□□ 0.64
CCDC88B-204ENST00000463837 LYPLAL1Q5VWZ2 237 aa19.08■□□□□ 0.64
CCDC88B-204ENST00000463837 C11orf88Q6PI97 169 aa19.08■□□□□ 0.64
CCDC88B-204ENST00000463837 GTF2A1LQ9UNN4 478 aa19.08■□□□□ 0.64
CCDC88B-204ENST00000463837 NR2E1Q9Y466 385 aa19.08■□□□□ 0.64
CCDC88B-204ENST00000463837 MRC1P22897 1456 aa19.08■□□□□ 0.64
CCDC88B-204ENST00000463837 G3V2T6 193 aa19.08■□□□□ 0.64
CCDC88B-204ENST00000463837 TIPRLO75663 272 aa19.08■□□□□ 0.64
CCDC88B-204ENST00000463837 ALDH9A1P49189 494 aa19.08■□□□□ 0.64
CCDC88B-204ENST00000463837 CDK9P50750 372 aaKnown RBP19.08■□□□□ 0.64
CCDC88B-204ENST00000463837 LIMK2P53671 638 aa19.08■□□□□ 0.64
CCDC88B-204ENST00000463837 ATAD3BQ5T9A4 648 aa19.08■□□□□ 0.64
CCDC88B-204ENST00000463837 CD101Q93033 1021 aa19.08■□□□□ 0.64
CCDC88B-204ENST00000463837 MED8Q96G25 268 aa19.08■□□□□ 0.64
CCDC88B-204ENST00000463837 MAF1Q9H063 256 aa19.08■□□□□ 0.64
CCDC88B-204ENST00000463837 WDR55Q9H6Y2 383 aaPredicted RBP19.08■□□□□ 0.64
CCDC88B-204ENST00000463837 GPIP06744 558 aa19.08■□□□□ 0.64
CCDC88B-204ENST00000463837 ZNF12P17014 697 aa19.08■□□□□ 0.64
CCDC88B-204ENST00000463837 OLR1P78380 273 aa19.08■□□□□ 0.64
CCDC88B-204ENST00000463837 STARD3Q14849 445 aa19.08■□□□□ 0.64
CCDC88B-204ENST00000463837 PAGE2BQ5JRK9 111 aa19.08■□□□□ 0.64
CCDC88B-204ENST00000463837 SLC47A1Q96FL8 570 aa19.08■□□□□ 0.64
CCDC88B-204ENST00000463837 REXO5Q96IC2 774 aaKnown RBP19.08■□□□□ 0.64
CCDC88B-204ENST00000463837 RPS6KB2Q9UBS0 482 aa19.08■□□□□ 0.64
CCDC88B-204ENST00000463837 EGFL7Q9UHF1 273 aa19.08■□□□□ 0.64
CCDC88B-204ENST00000463837 WNT10BO00744 389 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 TYMPP19971 482 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 FOXN2P32314 431 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 ACTR3P61158 418 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 GK5Q6ZS86 529 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 MYLPFQ96A32 169 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 MTFMTQ96DP5 389 aaKnown RBP19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 RRAGCQ9HB90 399 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 TAS2R1Q9NYW7 299 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 IPO13O94829 963 aaKnown RBP19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 WARSP23381 471 aaKnown RBP19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 SMIM11AP58511 58 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 OLFML1Q6UWY5 402 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 ATG14Q6ZNE5 492 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 THAP5Q7Z6K1 395 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 PARP8Q8N3A8 854 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 IL31RAQ8NI17 732 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 CSPG4P5Q96PW8 444 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 POLE3Q9NRF9 147 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 NADKO95544 446 aaPredicted RBP19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 GRM5P41594 1212 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 MFSD10Q14728 455 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 INTS6LQ5JSJ4 861 aaKnown RBP19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 GCNT7Q6ZNI0 430 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 ROPN1LQ96C74 230 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 ITCHQ96J02 903 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 GINS4Q9BRT9 223 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 ZYG11BQ9C0D3 744 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 KLHL1Q9NR64 748 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 SMPD3Q9NY59 655 aaPredicted RBP19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 PLK2Q9NYY3 685 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 BTRCQ9Y297 605 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 MATN2O00339 956 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 PAPSS1O43252 624 aaPredicted RBP19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 SH3BGRLO75368 114 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 FAM155BO75949 473 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 PPIBP23284 216 aaKnown RBP19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 BDNFP23560 247 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 CTBP1Q13363 440 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 KIAA0408Q6ZU52 694 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 SLC26A9Q7LBE3 791 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 QRFPRQ96P65 431 aa19.07■□□□□ 0.64
CCDC88B-204ENST00000463837 CES1P23141 567 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 S100A1P23297 94 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 PEX2P28328 305 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 EVX2Q03828 476 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 BCL2L1Q07817 233 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 ZSWIM7Q19AV6 140 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 C6orf52Q5T4I8 152 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 C6orf89Q6UWU4 347 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 NEK10Q6ZWH5 1172 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 AKAP14Q86UN6 197 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 ATL1Q8WXF7 558 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 FAM84AQ96KN4 292 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 HMX1Q9NP08 348 aaPredicted RBP19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 FGF1P05230 155 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 QPRTQ15274 297 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 ANKRD22Q5VYY1 191 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 CHMP1BQ7LBR1 199 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 CACTIN-AS1Q8N1I8 211 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 KLHL23Q8NBE8 558 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 FAXDC2Q96IV6 333 aa19.06■□□□□ 0.64
CCDC88B-204ENST00000463837 SLC4A9Q96Q91 983 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms