RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	GLB1	P16278	677 aa		11.23	□□□□□ -0.61
PTPN7-204	ENST00000462815	EEF1G	P26641	437 aa	Known RBP	11.23	□□□□□ -0.61
PTPN7-204	ENST00000462815	TRIM23	P36406	574 aa		11.23	□□□□□ -0.61
PTPN7-204	ENST00000462815	ARSD	P51689	593 aa		11.23	□□□□□ -0.61
PTPN7-204	ENST00000462815	ZNF143	P52747	638 aa	Predicted RBP	11.23	□□□□□ -0.61
PTPN7-204	ENST00000462815	RPL7A	P62424	266 aa	Known RBP	11.23	□□□□□ -0.61
PTPN7-204	ENST00000462815	OGDH	Q02218	1023 aa		11.23	□□□□□ -0.61
PTPN7-204	ENST00000462815	KCNC4	Q03721	635 aa		11.23	□□□□□ -0.61
PTPN7-204	ENST00000462815	RAD51	Q06609	339 aa		11.23	□□□□□ -0.61
PTPN7-204	ENST00000462815	TPD52L1	Q16890	204 aa	Predicted RBP	11.23	□□□□□ -0.61
PTPN7-204	ENST00000462815	AFMID	Q63HM1	303 aa		11.23	□□□□□ -0.61
PTPN7-204	ENST00000462815	TRIM72	Q6ZMU5	477 aa		11.23	□□□□□ -0.61
PTPN7-204	ENST00000462815	GKN2	Q86XP6	184 aa		11.23	□□□□□ -0.61
PTPN7-204	ENST00000462815	CAMK1D	Q8IU85	385 aa		11.23	□□□□□ -0.61
PTPN7-204	ENST00000462815	CCNJL	Q8IV13	435 aa		11.23	□□□□□ -0.61
PTPN7-204	ENST00000462815	ARHGAP12	Q8IWW6	846 aa		11.23	□□□□□ -0.61
PTPN7-204	ENST00000462815	OR6C4	Q8NGE1	309 aa		11.23	□□□□□ -0.61
PTPN7-204	ENST00000462815	CCL4L1	Q8NHW4	92 aa		11.23	□□□□□ -0.61
PTPN7-204	ENST00000462815	HTR3C	Q8WXA8	447 aa		11.23	□□□□□ -0.61
PTPN7-204	ENST00000462815	SGF29	Q96ES7	293 aa		11.23	□□□□□ -0.61
PTPN7-204	ENST00000462815	ZNF641	Q96N77	438 aa	Predicted RBP	11.23	□□□□□ -0.61
PTPN7-204	ENST00000462815	SYNDIG1	Q9H7V2	258 aa		11.23	□□□□□ -0.61
PTPN7-204	ENST00000462815	MRPL40	Q9NQ50	206 aa	Known RBP	11.23	□□□□□ -0.61
PTPN7-204	ENST00000462815	KL	Q9UEF7	1012 aa		11.23	□□□□□ -0.61
PTPN7-204	ENST00000462815	ATP8A1	Q9Y2Q0	1164 aa		11.23	□□□□□ -0.61
PTPN7-204	ENST00000462815	DAAM1	Q9Y4D1	1078 aa		11.23	□□□□□ -0.61
PTPN7-204	ENST00000462815	RNF215	Q9Y6U7	377 aa		11.23	□□□□□ -0.61
PTPN7-204	ENST00000462815	PRAMEF33	A0A0G2JMD5	474 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	TMX2-CTNND1	H3BSU7	103 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	TRAFD1	O14545	582 aa	Predicted RBP	11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	PRAMEF10	O60809	474 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	FUCA1	P04066	466 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	ITGB2	P05107	769 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	PCCB	P05166	539 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	CTSE	P14091	401 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	CSNK1D	P48730	415 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	AIF1	P55008	147 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	POLR2F	P61218	127 aa	Known RBP	11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	B4GALNT1	Q00973	533 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	NR1D2	Q14995	579 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	KRT31	Q15323	416 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	EFHC2	Q5JST6	749 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	BRAT1	Q6PJG6	821 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	LIPI	Q6XZB0	460 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	CYP4V2	Q6ZWL3	525 aa	Predicted RBP	11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	ZNF438	Q7Z4V0	828 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	NRROS	Q86YC3	692 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	ARFGAP1	Q8N6T3	406 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	OR56A4	Q8NGH8	313 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	SCG3	Q8WXD2	468 aa	Known RBP	11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	SPOCK2	Q92563	424 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	EXTL1	Q92935	676 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	TMEM74	Q96NL1	305 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	TUBGCP5	Q96RT8	1024 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	SYT11	Q9BT88	431 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	LGR4	Q9BXB1	951 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	TMEM168	Q9H0V1	697 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	NLRC4	Q9NPP4	1024 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	FAM207A	Q9NSI2	230 aa	Predicted RBP	11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	ADAM22	Q9P0K1	906 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	UBA2	Q9UBT2	640 aa	Predicted RBP	11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	PISD	Q9UG56	409 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	PCDHGA4	Q9Y5G9	962 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	ST14	Q9Y5Y6	855 aa		11.22	□□□□□ -0.61
PTPN7-204	ENST00000462815	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	TNFRSF10C	O14798	259 aa		11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	FGF10	O15520	208 aa	Predicted RBP	11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	ARHGAP6	O43182	974 aa		11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	NUDT21	O43809	227 aa	Known RBP	11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	CREB3	O43889	395 aa		11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	RECQL5	O94762	991 aa	Predicted RBP	11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	TNF	P01375	233 aa		11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	HTR1B	P28222	390 aa		11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	NSF	P46459	744 aa	Known RBP	11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	NDST2	P52849	883 aa		11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	NFATC3	Q12968	1075 aa		11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	GRM3	Q14832	879 aa		11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	C16orf72	Q14CZ0	275 aa		11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	CA9	Q16790	459 aa		11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	C14orf28	Q4W4Y0	310 aa		11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	XKR5	Q6UX68	686 aa		11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	ZNF574	Q6ZN55	896 aa	Predicted RBP	11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	ARHGAP36	Q6ZRI8	547 aa		11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	DPPA4	Q7L190	304 aa		11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	PRICKLE2	Q7Z3G6	844 aa		11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	RD3	Q7Z3Z2	195 aa		11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	VASH2	Q86V25	355 aa		11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	ZFAND4	Q86XD8	727 aa		11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	CBARP	Q8N350	705 aa	Predicted RBP	11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	NPW	Q8N729	165 aa		11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	TSEN2	Q8NCE0	465 aa	Known RBP	11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	ENOX1	Q8TC92	643 aa	Known RBP	11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	PTCD2	Q8WV60	388 aa	Known RBP	11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	PMEPA1	Q969W9	287 aa		11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	TMEM159	Q96B96	161 aa		11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	CELF6	Q96J87	481 aa	Known RBP	11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	MCEE	Q96PE7	176 aa		11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	PEBP4	Q96S96	227 aa		11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	FUCA2	Q9BTY2	467 aa		11.21	□□□□□ -0.61
PTPN7-204	ENST00000462815	SELENOO	Q9BVL4	669 aa		11.21	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms