RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 MAGEC1O60732 1142 aa18.75■□□□□ 0.59
SHH-204ENST00000441114 MMP2P08253 660 aa18.75■□□□□ 0.59
SHH-204ENST00000441114 ALPIP09923 528 aa18.75■□□□□ 0.59
SHH-204ENST00000441114 NXPH1P58417 271 aa18.75■□□□□ 0.59
SHH-204ENST00000441114 EIF3EP60228 445 aaKnown RBP18.75■□□□□ 0.59
SHH-204ENST00000441114 SKOR1P84550 965 aa18.75■□□□□ 0.59
SHH-204ENST00000441114 RALGDSQ12967 914 aa18.75■□□□□ 0.59
SHH-204ENST00000441114 KDM7AQ6ZMT4 941 aa18.75■□□□□ 0.59
SHH-204ENST00000441114 DPPA4Q7L190 304 aa18.75■□□□□ 0.59
SHH-204ENST00000441114 SPATS2Q86XZ4 545 aaKnown RBP18.75■□□□□ 0.59
SHH-204ENST00000441114 OR13H1Q8NG92 308 aa18.75■□□□□ 0.59
SHH-204ENST00000441114 HTR3CQ8WXA8 447 aa18.75■□□□□ 0.59
SHH-204ENST00000441114 BMFQ96LC9 184 aa18.75■□□□□ 0.59
SHH-204ENST00000441114 QKIQ96PU8 341 aaKnown RBP eCLIP18.75■□□□□ 0.59
SHH-204ENST00000441114 SMIM14Q96QK8 99 aa18.75■□□□□ 0.59
SHH-204ENST00000441114 KLF6Q99612 283 aaPredicted RBP18.75■□□□□ 0.59
SHH-204ENST00000441114 GDF3Q9NR23 364 aa18.75■□□□□ 0.59
SHH-204ENST00000441114 TM7SF3Q9NS93 570 aa18.75■□□□□ 0.59
SHH-204ENST00000441114 DNAAF2Q9NVR5 837 aaKnown RBP18.75■□□□□ 0.59
SHH-204ENST00000441114 HS3ST3A1Q9Y663 406 aa18.75■□□□□ 0.59
SHH-204ENST00000441114 LAMA1P25391 3075 aa18.74■□□□□ 0.59
SHH-204ENST00000441114 GOLGA6L9A6NEM1 432 aa18.74■□□□□ 0.59
SHH-204ENST00000441114 A6NNZ2 444 aa18.74■□□□□ 0.59
SHH-204ENST00000441114 HACD1B0YJ81 288 aa18.74■□□□□ 0.59
SHH-204ENST00000441114 F5H423 210 aaPredicted RBP18.74■□□□□ 0.59
SHH-204ENST00000441114 ELFN1P0C7U0 828 aa18.74■□□□□ 0.59
SHH-204ENST00000441114 CYP2A6P11509 494 aaPredicted RBP18.74■□□□□ 0.59
SHH-204ENST00000441114 CA4P22748 312 aa18.74■□□□□ 0.59
SHH-204ENST00000441114 RBL1P28749 1068 aa18.74■□□□□ 0.59
SHH-204ENST00000441114 WASHC5Q12768 1159 aa18.74■□□□□ 0.59
SHH-204ENST00000441114 XRCC4Q13426 336 aa18.74■□□□□ 0.59
SHH-204ENST00000441114 ACOX1Q15067 660 aa18.74■□□□□ 0.59
SHH-204ENST00000441114 RPS6KA1Q15418 735 aa18.74■□□□□ 0.59
SHH-204ENST00000441114 PCSK7Q16549 785 aa18.74■□□□□ 0.59
SHH-204ENST00000441114 ZNF423Q2M1K9 1284 aa18.74■□□□□ 0.59
SHH-204ENST00000441114 SEL1L2Q5TEA6 688 aa18.74■□□□□ 0.59
SHH-204ENST00000441114 MEI1Q5TIA1 1274 aa18.74■□□□□ 0.59
SHH-204ENST00000441114 DARS2Q6PI48 645 aaKnown RBP18.74■□□□□ 0.59
SHH-204ENST00000441114 LIPIQ6XZB0 460 aa18.74■□□□□ 0.59
SHH-204ENST00000441114 Q6ZSR6 202 aa18.74■□□□□ 0.59
SHH-204ENST00000441114 PID1Q7Z2X4 250 aa18.74■□□□□ 0.59
SHH-204ENST00000441114 KDELC2Q7Z4H8 507 aa18.74■□□□□ 0.59
SHH-204ENST00000441114 IQCHQ86VS3 1027 aa18.74■□□□□ 0.59
SHH-204ENST00000441114 NDUFAF2Q8N183 169 aa18.74■□□□□ 0.59
SHH-204ENST00000441114 LPCAT1Q8NF37 534 aa18.74■□□□□ 0.59
SHH-204ENST00000441114 PIH1D2Q8WWB5 315 aa18.74■□□□□ 0.59
SHH-204ENST00000441114 ASB12Q8WXK4 309 aa18.74■□□□□ 0.59
SHH-204ENST00000441114 LENG8Q96PV6 779 aaPredicted RBP18.74■□□□□ 0.59
SHH-204ENST00000441114 C1QTNF7Q9BXJ2 289 aa18.74■□□□□ 0.59
SHH-204ENST00000441114 TDRD1Q9BXT4 1180 aaKnown RBP18.74■□□□□ 0.59
SHH-204ENST00000441114 GLOD4Q9HC38 313 aa18.74■□□□□ 0.59
SHH-204ENST00000441114 PCDH9Q9HC56 1237 aa18.74■□□□□ 0.59
SHH-204ENST00000441114 MBNL1Q9NR56 388 aaKnown RBP18.74■□□□□ 0.59
SHH-204ENST00000441114 KLHL8Q9P2G9 620 aaPredicted RBP18.74■□□□□ 0.59
SHH-204ENST00000441114 ASCC3Q8N3C0 2202 aaKnown RBP18.73■□□□□ 0.59
SHH-204ENST00000441114 A0A0U1RQS6 177 aa18.73■□□□□ 0.59
SHH-204ENST00000441114 MTSS1O43312 755 aa18.73■□□□□ 0.59
SHH-204ENST00000441114 FZD6O60353 706 aa18.73■□□□□ 0.59
SHH-204ENST00000441114 RBP3P10745 1247 aa18.73■□□□□ 0.59
SHH-204ENST00000441114 NFKBIAP25963 317 aa18.73■□□□□ 0.59
SHH-204ENST00000441114 VIPR1P32241 457 aa18.73■□□□□ 0.59
SHH-204ENST00000441114 IGFALSP35858 605 aa18.73■□□□□ 0.59
SHH-204ENST00000441114 OVGP1Q12889 678 aa18.73■□□□□ 0.59
SHH-204ENST00000441114 USP45Q70EL2 814 aa18.73■□□□□ 0.59
SHH-204ENST00000441114 DGLUCYQ7Z3D6 616 aa18.73■□□□□ 0.59
SHH-204ENST00000441114 ABI3BPQ7Z7G0 1075 aa18.73■□□□□ 0.59
SHH-204ENST00000441114 SPATA22Q8NHS9 363 aa18.73■□□□□ 0.59
SHH-204ENST00000441114 CENPTQ96BT3 561 aa18.73■□□□□ 0.59
SHH-204ENST00000441114 IMP4Q96G21 291 aaKnown RBP18.73■□□□□ 0.59
SHH-204ENST00000441114 PDLIM2Q96JY6 352 aa18.73■□□□□ 0.59
SHH-204ENST00000441114 TEKT5Q96M29 485 aa18.73■□□□□ 0.59
SHH-204ENST00000441114 ELF4Q99607 663 aaPredicted RBP18.73■□□□□ 0.59
SHH-204ENST00000441114 SLC25A51Q9H1U9 297 aa18.73■□□□□ 0.59
SHH-204ENST00000441114 UBP1Q9NZI7 540 aa18.73■□□□□ 0.59
SHH-204ENST00000441114 TDRD6O60522 2096 aaKnown RBP18.73■□□□□ 0.59
SHH-204ENST00000441114 DMXL1Q9Y485 3027 aa18.72■□□□□ 0.59
SHH-204ENST00000441114 TCRBV7S2A1N4TA0A589 114 aa18.72■□□□□ 0.59
SHH-204ENST00000441114 NPIPB15A6NHN6 443 aaPredicted RBP18.72■□□□□ 0.59
SHH-204ENST00000441114 TM4SF5O14894 197 aa18.72■□□□□ 0.59
SHH-204ENST00000441114 MT-CYBP00156 380 aaPredicted RBP18.72■□□□□ 0.59
SHH-204ENST00000441114 PCCBP05166 539 aa18.72■□□□□ 0.59
SHH-204ENST00000441114 CD59P13987 128 aa18.72■□□□□ 0.59
SHH-204ENST00000441114 NFKB1P19838 968 aa18.72■□□□□ 0.59
SHH-204ENST00000441114 HNF1BP35680 557 aa18.72■□□□□ 0.59
SHH-204ENST00000441114 CCT8P50990 548 aa18.72■□□□□ 0.59
SHH-204ENST00000441114 ARHGEF7Q14155 803 aa18.72■□□□□ 0.59
SHH-204ENST00000441114 LRRC14Q15048 493 aa18.72■□□□□ 0.59
SHH-204ENST00000441114 IRF4Q15306 451 aa18.72■□□□□ 0.59
SHH-204ENST00000441114 KYAT3Q6YP21 454 aaKnown RBP18.72■□□□□ 0.59
SHH-204ENST00000441114 TSPAN33Q86UF1 283 aa18.72■□□□□ 0.59
SHH-204ENST00000441114 CDKL3Q8IVW4 592 aaPredicted RBP18.72■□□□□ 0.59
SHH-204ENST00000441114 ZNF567Q8N184 647 aa18.72■□□□□ 0.59
SHH-204ENST00000441114 TP53I13Q8NBR0 393 aaPredicted RBP18.72■□□□□ 0.59
SHH-204ENST00000441114 DENND6BQ8NEG7 585 aa18.72■□□□□ 0.59
SHH-204ENST00000441114 DEFB124Q8NES8 71 aa18.72■□□□□ 0.59
SHH-204ENST00000441114 TRIM58Q8NG06 486 aa18.72■□□□□ 0.59
SHH-204ENST00000441114 SETD7Q8WTS6 366 aaKnown RBP18.72■□□□□ 0.59
SHH-204ENST00000441114 SCRN2Q96FV2 425 aa18.72■□□□□ 0.59
SHH-204ENST00000441114 TRMT1Q9NXH9 659 aaKnown RBP18.72■□□□□ 0.59
SHH-204ENST00000441114 A0A1B0GTQ1 180 aa18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms