RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 SAV1Q9H4B6 383 aaPredicted RBP7.21□□□□□ -1.25
VPS53-204ENST00000437048 SH3PXD2BA1X283 911 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 AP5Z1O43299 807 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 CDC25AP30304 524 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 FEN1P39748 380 aaKnown RBP7.21□□□□□ -1.26
VPS53-204ENST00000437048 EMC2Q15006 297 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 ATF7IP2Q5U623 682 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 ADGRD2Q7Z7M1 963 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 ARMC8Q8IUR7 673 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 TBC1D10CQ8IV04 446 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 OR8H1Q8NGG4 311 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 FOLH1BQ9HBA9 442 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 PCDHGB5Q9Y5G0 923 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 RPTORQ8N122 1335 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP7.21□□□□□ -1.26
VPS53-204ENST00000437048 NARSO43776 548 aaKnown RBP7.21□□□□□ -1.26
VPS53-204ENST00000437048 CCR1P32246 355 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 ERVK-24P63145 666 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 ZNF177Q13360 481 aaPredicted RBP7.21□□□□□ -1.26
VPS53-204ENST00000437048 ZNF423Q2M1K9 1284 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 MCOLN2Q8IZK6 566 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 ZNF548Q8NEK5 533 aaPredicted RBP7.21□□□□□ -1.26
VPS53-204ENST00000437048 ASB9Q96DX5 294 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 CERS2Q96G23 380 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 THAP2Q9H0W7 228 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 ARCN1P48444 511 aaKnown RBP7.21□□□□□ -1.26
VPS53-204ENST00000437048 ARL4DP49703 201 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 RPP38P78345 283 aaKnown RBP7.21□□□□□ -1.26
VPS53-204ENST00000437048 MILR1Q7Z6M3 343 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 OR2W6PQ8NHA6 318 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 FIG4Q92562 907 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 HSFY1Q96LI6 401 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 CATSPERZQ9NTU4 200 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 ZNF222Q9UK12 451 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 PCDHA11Q9Y5I1 949 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 CNTNAP5Q8WYK1 1306 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 A0A1B0GVI7 797 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 NRP2O60462 931 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 PGRP06401 933 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 PRPS2P11908 318 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 MSR1P21757 451 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 CDC25CP30307 473 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 SLC1A2P43004 574 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 OAZ1P54368 228 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 PDIA6Q15084 440 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 WDR59Q6PJI9 974 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 KCNK18Q7Z418 384 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 FAM47BQ8NA70 645 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 PSKH2Q96QS6 385 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 RUSC1Q9BVN2 902 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 SCGNO76038 276 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 FGF1P05230 155 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 CDH5P33151 784 aaPredicted RBP7.21□□□□□ -1.26
VPS53-204ENST00000437048 MAGEA3P43357 314 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 ARHGAP36Q6ZRI8 547 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 PIGWQ7Z7B1 504 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 PIH1D2Q8WWB5 315 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 COA7Q96BR5 231 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 PLIN3O60664 434 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 LYPLA1O75608 230 aaPredicted RBP7.21□□□□□ -1.26
VPS53-204ENST00000437048 SLC22A3O75751 556 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 BGNP21810 368 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 GRIA3P42263 894 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 RPS9P46781 194 aaKnown RBP7.21□□□□□ -1.26
VPS53-204ENST00000437048 SSTP61278 116 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 TCP10Q12799 353 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 EML3Q32P44 896 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 GDPGP1Q6ZNW5 385 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 LAPTM4BQ86VI4 370 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 GATAD2AQ86YP4 633 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 NAT16Q8N8M0 369 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 INTS7Q9NVH2 962 aaKnown RBP7.21□□□□□ -1.26
VPS53-204ENST00000437048 SAMHD1Q9Y3Z3 626 aaKnown RBP7.21□□□□□ -1.26
VPS53-204ENST00000437048 A0A087WZ62 844 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 NDUFS2O75306 463 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 CSPG5O95196 566 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 FAM182AQ5T1J6 154 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 EMC10Q5UCC4 262 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 HACD4Q5VWC8 232 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 BEND5Q7L4P6 421 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 BEND7Q8N7W2 519 aaPredicted RBP7.21□□□□□ -1.26
VPS53-204ENST00000437048 SMG8Q8ND04 991 aaKnown RBP7.21□□□□□ -1.26
VPS53-204ENST00000437048 ROGDIQ9GZN7 287 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 ZNF224Q9NZL3 707 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 XPR1Q9UBH6 696 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 PRKAG3Q9UGI9 489 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 ZNF214Q9UL59 606 aaPredicted RBP7.21□□□□□ -1.26
VPS53-204ENST00000437048 DHRS7Q9Y394 339 aa7.21□□□□□ -1.26
VPS53-204ENST00000437048 SIGLEC16A6NMB1 481 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 H0YAE9 185 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 NUAK1O60285 661 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 PROZP22891 400 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 CHRNA5P30532 468 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 UGT2B10P36537 528 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 ZYXQ15942 572 aaKnown RBP7.2□□□□□ -1.26
VPS53-204ENST00000437048 FAM91A1Q658Y4 838 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 ZBTB33Q86T24 672 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 BRSK2Q8IWQ3 736 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 ARL10Q8N8L6 244 aa7.2□□□□□ -1.26
VPS53-204ENST00000437048 PHF12Q96QT6 1004 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms