RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 INTS12Q96CB8 462 aaKnown RBP4.29□□□□□ -1.72
HMGB3-203ENST00000430118 COQ10AQ96MF6 247 aa4.29□□□□□ -1.72
HMGB3-203ENST00000430118 GUCD1Q96NT3 240 aa4.29□□□□□ -1.72
HMGB3-203ENST00000430118 FRG2BQ96QU4 278 aa4.29□□□□□ -1.72
HMGB3-203ENST00000430118 CCDC94Q9BW85 323 aaPredicted RBP4.29□□□□□ -1.72
HMGB3-203ENST00000430118 TEX12Q9BXU0 123 aa4.29□□□□□ -1.72
HMGB3-203ENST00000430118 CADM1Q9BY67 442 aaKnown RBP4.29□□□□□ -1.72
HMGB3-203ENST00000430118 ANKRD2Q9GZV1 360 aa4.29□□□□□ -1.72
HMGB3-203ENST00000430118 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.29□□□□□ -1.72
HMGB3-203ENST00000430118 SMARCAD1Q9H4L7 1026 aa4.29□□□□□ -1.72
HMGB3-203ENST00000430118 BABAM1Q9NWV8 329 aa4.29□□□□□ -1.72
HMGB3-203ENST00000430118 RAI14Q9P0K7 980 aa4.29□□□□□ -1.72
HMGB3-203ENST00000430118 ZNF70Q9UC06 446 aaPredicted RBP4.29□□□□□ -1.72
HMGB3-203ENST00000430118 CHORDC1Q9UHD1 332 aaPredicted RBP4.29□□□□□ -1.72
HMGB3-203ENST00000430118 RPS6KA6Q9UK32 745 aa4.29□□□□□ -1.72
HMGB3-203ENST00000430118 ZNF215Q9UL58 517 aaPredicted RBP4.29□□□□□ -1.72
HMGB3-203ENST00000430118 B3GNT3Q9Y2A9 372 aa4.29□□□□□ -1.72
HMGB3-203ENST00000430118 DTX4Q9Y2E6 619 aa4.29□□□□□ -1.72
HMGB3-203ENST00000430118 COL2A1P02458 1487 aaPredicted RBP4.29□□□□□ -1.72
HMGB3-203ENST00000430118 OTOFQ9HC10 1997 aa4.29□□□□□ -1.72
HMGB3-203ENST00000430118 CENPVL1A0A0U1RR11 272 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 UNC119BA6NIH7 251 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 A8MZ25 164 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 H0YIZ8 118 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 H7C0S8 307 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 H7C1Q1 480 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 PDHXO00330 501 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 PRYO14603 147 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 STRNO43815 780 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 PRICKLE3O43900 615 aaPredicted RBP4.28□□□□□ -1.72
HMGB3-203ENST00000430118 PAGE4O60829 102 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 MT-CO3P00414 261 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 ENO1P06733 434 aaKnown RBP4.28□□□□□ -1.72
HMGB3-203ENST00000430118 ELFN1P0C7U0 828 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 IRF1P10914 325 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 LYL1P12980 280 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 APEHP13798 732 aaKnown RBP4.28□□□□□ -1.72
HMGB3-203ENST00000430118 BMP7P18075 431 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 FMO4P31512 558 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 ICAM3P32942 547 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 ACSL1P33121 698 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 CYP2C18P33260 490 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 HADHAP40939 763 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 GRIA3P42263 894 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 CPA2P48052 419 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 CLK3P49761 638 aaKnown RBP4.28□□□□□ -1.72
HMGB3-203ENST00000430118 ZNF84P51523 738 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 SNX16P57768 344 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 FKBP1AP62942 108 aaKnown RBP4.28□□□□□ -1.72
HMGB3-203ENST00000430118 IFI35P80217 286 aaPredicted RBP4.28□□□□□ -1.72
HMGB3-203ENST00000430118 SLC25A3Q00325 362 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 PPATQ06203 517 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 NIPAL4Q0D2K0 466 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 CDC16Q13042 620 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 IL13RA2Q14627 380 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 DPCR1Q3MIW9 517 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 FBLN7Q53RD9 439 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 RNASE12Q5GAN4 147 aaKnown RBP4.28□□□□□ -1.72
HMGB3-203ENST00000430118 KAZNQ674X7 775 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 FAM43BQ6ZT52 329 aaPredicted RBP4.28□□□□□ -1.72
HMGB3-203ENST00000430118 RTL10Q7L3V2 364 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 SLC46A3Q7Z3Q1 461 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 TMEM200AQ86VY9 491 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 TICAM1Q8IUC6 712 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 CREBRFQ8IUR6 639 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 AMER2Q8N7J2 671 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 PLD5Q8N7P1 536 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 GPATCH11Q8N954 259 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 EXD3Q8N9H8 876 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 TMEM116Q8NCL8 245 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 SETD9Q8NE22 299 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 ASB10Q8WXI3 467 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 SLC9A6Q92581 669 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 HAS1Q92839 578 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 KLHL15Q96M94 604 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 ZMAT2Q96NC0 199 aaKnown RBP4.28□□□□□ -1.72
HMGB3-203ENST00000430118 CDX2Q99626 313 aaPredicted RBP4.28□□□□□ -1.72
HMGB3-203ENST00000430118 THUMPD2Q9BTF0 503 aaKnown RBP4.28□□□□□ -1.72
HMGB3-203ENST00000430118 HDHD5Q9BXW7 423 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 RSPH9Q9H1X1 276 aaPredicted RBP4.28□□□□□ -1.72
HMGB3-203ENST00000430118 TTYH1Q9H313 450 aaPredicted RBP4.28□□□□□ -1.72
HMGB3-203ENST00000430118 SH2D4AQ9H788 454 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 KAT14Q9H8E8 782 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 TXNRD2Q9NNW7 524 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 ENTPD7Q9NQZ7 604 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 SPATS2LQ9NUQ6 558 aaKnown RBP4.28□□□□□ -1.72
HMGB3-203ENST00000430118 TMEM248Q9NWD8 314 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 MARCH4Q9P2E8 410 aaPredicted RBP4.28□□□□□ -1.72
HMGB3-203ENST00000430118 PEMTQ9UBM1 199 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 GIMAP2Q9UG22 337 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 ZHX1Q9UKY1 873 aaPredicted RBP4.28□□□□□ -1.72
HMGB3-203ENST00000430118 CORO1CQ9ULV4 474 aaPredicted RBP4.28□□□□□ -1.72
HMGB3-203ENST00000430118 MAFFQ9ULX9 164 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 VPS4AQ9UN37 437 aa4.28□□□□□ -1.72
HMGB3-203ENST00000430118 EYSQ5T1H1 3165 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 CDH23Q9H251 3354 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 OR6C68A6NDL8 312 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 C17orf100A8MU93 164 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 KCNJ18B7U540 433 aa4.27□□□□□ -1.73
HMGB3-203ENST00000430118 LDLRAD4O15165 306 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms