RNA–Protein interactions for RNA: ENST00000429411.5

HPS4-205, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 3,492 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-205ENST00000429411 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.1□□□□□ -1.11
HPS4-205ENST00000429411 CATSPERBQ9H7T0 1116 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 RGS18Q9NS28 235 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 SAGE1Q9NXZ1 904 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 FBXW11Q9UKB1 542 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 ZNF711Q9Y462 761 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 PTGDR2Q9Y5Y4 395 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 CDH23Q9H251 3354 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 NRCAMQ92823 1304 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 E7ENX8 843 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 CCNT2O60583 730 aaKnown RBP8.1□□□□□ -1.11
HPS4-205ENST00000429411 NOL3O60936 208 aaKnown RBP8.1□□□□□ -1.11
HPS4-205ENST00000429411 GMNNO75496 209 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 RTN3O95197 1032 aaPredicted RBP8.1□□□□□ -1.11
HPS4-205ENST00000429411 C1QAP02745 245 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 UGT1A6P19224 532 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 RPL10P27635 214 aaKnown RBP8.1□□□□□ -1.11
HPS4-205ENST00000429411 DNAJA1P31689 397 aaKnown RBP8.1□□□□□ -1.11
HPS4-205ENST00000429411 OR1G1P47890 313 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 HARS2P49590 506 aaKnown RBP8.1□□□□□ -1.11
HPS4-205ENST00000429411 MTTPP55157 894 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 SIM2Q14190 667 aaPredicted RBP8.1□□□□□ -1.11
HPS4-205ENST00000429411 TAF12Q16514 161 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 RBBP7Q16576 425 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 NADK2Q4G0N4 442 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 PKDCCQ504Y2 493 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 C6orf10Q5SRN2 563 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 MARCH8Q5T0T0 291 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 OVOS1Q6IE37 1185 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 PKN3Q6P5Z2 889 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 TTC33Q6PID6 262 aaPredicted RBP8.1□□□□□ -1.11
HPS4-205ENST00000429411 ZYG11AQ6WRX3 759 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 ARHGAP22Q7Z5H3 698 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 CUZD1Q86UP6 607 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 TRPC4APQ8TEL6 797 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 SOCS4Q8WXH5 440 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 MAML3Q96JK9 1138 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 FAM193BQ96PV7 902 aaPredicted RBP8.1□□□□□ -1.11
HPS4-205ENST00000429411 TMEM209Q96SK2 561 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 SLC39A8Q9C0K1 460 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 C1orf21Q9H246 121 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 STN1Q9H668 368 aaKnown RBP8.1□□□□□ -1.11
HPS4-205ENST00000429411 PCDH12Q9NPG4 1184 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 SCHIP1Q9P0W5 487 aaPredicted RBP8.1□□□□□ -1.11
HPS4-205ENST00000429411 GMPR2Q9P2T1 348 aaKnown RBP8.1□□□□□ -1.11
HPS4-205ENST00000429411 FAM8A1Q9UBU6 413 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 CROTQ9UKG9 612 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 ADAM28Q9UKQ2 775 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 PCDHGB4Q9UN71 923 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 ST3GAL5Q9UNP4 418 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 PCDHGB5Q9Y5G0 923 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 COL11A1P12107 1806 aaPredicted RBP8.1□□□□□ -1.11
HPS4-205ENST00000429411 SHROOM3Q8TF72 1996 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 ARHGAP10A1A4S6 786 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 MATN2O00339 956 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 FBXO21O94952 628 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 TNFAIP8O95379 198 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 CLIC3O95833 236 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 LINC00032P0C843 101 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 LHX1P48742 406 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 DSC2Q02487 901 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 MSLNQ13421 630 aaPredicted RBP8.1□□□□□ -1.11
HPS4-205ENST00000429411 NAB1Q13506 487 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 ITGA7Q13683 1181 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 GALNT3Q14435 633 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 VPS26BQ4G0F5 336 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 SGO1Q5FBB7 561 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 MARC1Q5VT66 337 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 FBXL19Q6PCT2 694 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 HERC6Q8IVU3 1022 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 TXNDC5Q8NBS9 432 aaKnown RBP8.1□□□□□ -1.11
HPS4-205ENST00000429411 VPS50Q96JG6 964 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 SEPT5Q99719 369 aaPredicted RBP8.1□□□□□ -1.11
HPS4-205ENST00000429411 COQ10BQ9H8M1 238 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 GLOD4Q9HC38 313 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 DMAP1Q9NPF5 467 aaPredicted RBP8.1□□□□□ -1.11
HPS4-205ENST00000429411 NDFIP2Q9NV92 336 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 C6orf203Q9P0P8 240 aaPredicted RBP8.1□□□□□ -1.11
HPS4-205ENST00000429411 TIMM22Q9Y584 194 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 KCTD3Q9Y597 815 aa8.1□□□□□ -1.11
HPS4-205ENST00000429411 GRXCR2A6NFK2 248 aa8.09□□□□□ -1.11
HPS4-205ENST00000429411 TMEM114B3SHH9 223 aa8.09□□□□□ -1.11
HPS4-205ENST00000429411 PDLIM1O00151 329 aa8.09□□□□□ -1.11
HPS4-205ENST00000429411 SOAT2O75908 522 aa8.09□□□□□ -1.11
HPS4-205ENST00000429411 ATP5F1P24539 256 aaPredicted RBP8.09□□□□□ -1.11
HPS4-205ENST00000429411 SLC39A12Q504Y0 691 aa8.09□□□□□ -1.11
HPS4-205ENST00000429411 C10orf120Q5SQS8 335 aa8.09□□□□□ -1.11
HPS4-205ENST00000429411 RNF111Q6ZNA4 994 aa8.09□□□□□ -1.11
HPS4-205ENST00000429411 LPCAT2Q7L5N7 544 aa8.09□□□□□ -1.11
HPS4-205ENST00000429411 TAS2R42Q7RTR8 314 aa8.09□□□□□ -1.11
HPS4-205ENST00000429411 CNTD1Q8N815 330 aa8.09□□□□□ -1.11
HPS4-205ENST00000429411 PTGR2Q8N8N7 351 aaPredicted RBP8.09□□□□□ -1.11
HPS4-205ENST00000429411 CATSPER1Q8NEC5 780 aa8.09□□□□□ -1.11
HPS4-205ENST00000429411 C1orf50Q9BV19 199 aa8.09□□□□□ -1.11
HPS4-205ENST00000429411 DRC3Q9H069 523 aa8.09□□□□□ -1.11
HPS4-205ENST00000429411 BRD8Q9H0E9 1235 aa8.09□□□□□ -1.11
HPS4-205ENST00000429411 NSMCE4AQ9NXX6 385 aa8.09□□□□□ -1.11
HPS4-205ENST00000429411 MAFFQ9ULX9 164 aa8.09□□□□□ -1.11
HPS4-205ENST00000429411 LRRC14BA6NHZ5 514 aa8.09□□□□□ -1.11
HPS4-205ENST00000429411 PIRO00625 290 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms