RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 EBF2Q9HAK2 575 aa20.2■□□□□ 0.82
USP39-204ENST00000409766 MAN1C1Q9NR34 630 aa20.2■□□□□ 0.82
USP39-204ENST00000409766 SMPD4Q9NXE4 827 aa20.2■□□□□ 0.82
USP39-204ENST00000409766 NKX1-2Q9UD57 310 aaPredicted RBP20.2■□□□□ 0.82
USP39-204ENST00000409766 INSL5Q9Y5Q6 135 aa20.2■□□□□ 0.82
USP39-204ENST00000409766 HDAC3O15379 428 aa20.19■□□□□ 0.82
USP39-204ENST00000409766 CD3EAPO15446 510 aaKnown RBP20.19■□□□□ 0.82
USP39-204ENST00000409766 MAGEC1O60732 1142 aa20.19■□□□□ 0.82
USP39-204ENST00000409766 CCDC166P0CW27 439 aa20.19■□□□□ 0.82
USP39-204ENST00000409766 EZRP15311 586 aaKnown RBP20.19■□□□□ 0.82
USP39-204ENST00000409766 LAG3P18627 525 aa20.19■□□□□ 0.82
USP39-204ENST00000409766 TFEBP19484 476 aa20.19■□□□□ 0.82
USP39-204ENST00000409766 ATP5F1P24539 256 aaPredicted RBP20.19■□□□□ 0.82
USP39-204ENST00000409766 ELF1P32519 619 aa20.19■□□□□ 0.82
USP39-204ENST00000409766 PGM1P36871 562 aa20.19■□□□□ 0.82
USP39-204ENST00000409766 DNAJB13P59910 316 aa20.19■□□□□ 0.82
USP39-204ENST00000409766 METTL21CQ5VZV1 264 aa20.19■□□□□ 0.82
USP39-204ENST00000409766 RNF219Q5W0B1 726 aaPredicted RBP20.19■□□□□ 0.82
USP39-204ENST00000409766 HERC6Q8IVU3 1022 aa20.19■□□□□ 0.82
USP39-204ENST00000409766 ANKRD49Q8WVL7 239 aa20.19■□□□□ 0.82
USP39-204ENST00000409766 SCG3Q8WXD2 468 aaKnown RBP20.19■□□□□ 0.82
USP39-204ENST00000409766 CYP2S1Q96SQ9 504 aa20.19■□□□□ 0.82
USP39-204ENST00000409766 ZDHHC2Q9UIJ5 367 aa20.19■□□□□ 0.82
USP39-204ENST00000409766 ARIH1Q9Y4X5 557 aaPredicted RBP20.19■□□□□ 0.82
USP39-204ENST00000409766 OBSL1O75147 1896 aa20.19■□□□□ 0.82
USP39-204ENST00000409766 PRLP01236 227 aa20.19■□□□□ 0.82
USP39-204ENST00000409766 F11P03951 625 aa20.19■□□□□ 0.82
USP39-204ENST00000409766 CLTBP09497 229 aa20.19■□□□□ 0.82
USP39-204ENST00000409766 ILF2Q12905 390 aaKnown RBP20.19■□□□□ 0.82
USP39-204ENST00000409766 MRNIPQ6NTE8 343 aa20.19■□□□□ 0.82
USP39-204ENST00000409766 TMEM207Q6UWW9 146 aa20.19■□□□□ 0.82
USP39-204ENST00000409766 ARHGAP24Q8N264 748 aa20.19■□□□□ 0.82
USP39-204ENST00000409766 SGF29Q96ES7 293 aa20.19■□□□□ 0.82
USP39-204ENST00000409766 NUDCD1Q96RS6 583 aa20.19■□□□□ 0.82
USP39-204ENST00000409766 SLC22A12Q96S37 553 aa20.19■□□□□ 0.82
USP39-204ENST00000409766 TDRD1Q9BXT4 1180 aaKnown RBP20.19■□□□□ 0.82
USP39-204ENST00000409766 SCUBE2Q9NQ36 999 aa20.19■□□□□ 0.82
USP39-204ENST00000409766 CRYL1Q9Y2S2 319 aa20.19■□□□□ 0.82
USP39-204ENST00000409766 SPO11Q9Y5K1 396 aa20.19■□□□□ 0.82
USP39-204ENST00000409766 ANKRD36A6QL64 1941 aa20.18■□□□□ 0.82
USP39-204ENST00000409766 GRID2O43424 1007 aa20.18■□□□□ 0.82
USP39-204ENST00000409766 NPHS1O60500 1241 aa20.18■□□□□ 0.82
USP39-204ENST00000409766 CD160O95971 181 aa20.18■□□□□ 0.82
USP39-204ENST00000409766 C1RP00736 705 aa20.18■□□□□ 0.82
USP39-204ENST00000409766 MBL2P11226 248 aaPredicted RBP20.18■□□□□ 0.82
USP39-204ENST00000409766 NCF2P19878 526 aaPredicted RBP20.18■□□□□ 0.82
USP39-204ENST00000409766 CES1P23141 567 aa20.18■□□□□ 0.82
USP39-204ENST00000409766 CPOXP36551 454 aa20.18■□□□□ 0.82
USP39-204ENST00000409766 SLC26A3P40879 764 aa20.18■□□□□ 0.82
USP39-204ENST00000409766 RAP1GDS1P52306 607 aa20.18■□□□□ 0.82
USP39-204ENST00000409766 EPHB3P54753 998 aa20.18■□□□□ 0.82
USP39-204ENST00000409766 SMAD3P84022 425 aaKnown RBP20.18■□□□□ 0.82
USP39-204ENST00000409766 ARF5P84085 180 aa20.18■□□□□ 0.82
USP39-204ENST00000409766 PFKPQ01813 784 aa20.18■□□□□ 0.82
USP39-204ENST00000409766 NSUN2Q08J23 767 aaKnown RBP eCLIP20.18■□□□□ 0.82
USP39-204ENST00000409766 SEMA3AQ14563 771 aa20.18■□□□□ 0.82
USP39-204ENST00000409766 ACAP2Q15057 778 aa20.18■□□□□ 0.82
USP39-204ENST00000409766 DNAL1Q4LDG9 190 aa20.18■□□□□ 0.82
USP39-204ENST00000409766 SEL1L3Q68CR1 1132 aa20.18■□□□□ 0.82
USP39-204ENST00000409766 FAM45BPQ6NSW5 357 aa20.18■□□□□ 0.82
USP39-204ENST00000409766 PIWIL4Q7Z3Z4 852 aaKnown RBP20.18■□□□□ 0.82
USP39-204ENST00000409766 RNF135Q8IUD6 432 aa20.18■□□□□ 0.82
USP39-204ENST00000409766 CMTR2Q8IYT2 770 aaKnown RBP20.18■□□□□ 0.82
USP39-204ENST00000409766 ENDOVQ8N8Q3 282 aaKnown RBP20.18■□□□□ 0.82
USP39-204ENST00000409766 OR4L1Q8NH43 312 aa20.18■□□□□ 0.82
USP39-204ENST00000409766 FAM45AQ8TCE6 357 aa20.18■□□□□ 0.82
USP39-204ENST00000409766 OR52B2Q96RD2 323 aa20.18■□□□□ 0.82
USP39-204ENST00000409766 MUC3BQ9H195 1237 aa20.18■□□□□ 0.82
USP39-204ENST00000409766 POMKQ9H5K3 350 aa20.18■□□□□ 0.82
USP39-204ENST00000409766 ZNF334Q9HCZ1 680 aaPredicted RBP20.18■□□□□ 0.82
USP39-204ENST00000409766 NOP53Q9NZM5 478 aaKnown RBP20.18■□□□□ 0.82
USP39-204ENST00000409766 NCKIPSDQ9NZQ3 722 aa20.18■□□□□ 0.82
USP39-204ENST00000409766 EPB41L3Q9Y2J2 1087 aaPredicted RBP20.18■□□□□ 0.82
USP39-204ENST00000409766 LAMA2P24043 3122 aaKnown RBP20.18■□□□□ 0.82
USP39-204ENST00000409766 ANP32DO95626 131 aa20.17■□□□□ 0.82
USP39-204ENST00000409766 CRTAMO95727 393 aa20.17■□□□□ 0.82
USP39-204ENST00000409766 LATS1O95835 1130 aa20.17■□□□□ 0.82
USP39-204ENST00000409766 ZNF140P52738 457 aaPredicted RBP20.17■□□□□ 0.82
USP39-204ENST00000409766 KLC3Q6P597 504 aa20.17■□□□□ 0.82
USP39-204ENST00000409766 ZNF549Q6P9A3 640 aa20.17■□□□□ 0.82
USP39-204ENST00000409766 ZNF783Q6ZMS7 281 aa20.17■□□□□ 0.82
USP39-204ENST00000409766 TRIM67Q6ZTA4 783 aa20.17■□□□□ 0.82
USP39-204ENST00000409766 CCNYL1Q8N7R7 359 aa20.17■□□□□ 0.82
USP39-204ENST00000409766 ADAMTS19Q8TE59 1207 aa20.17■□□□□ 0.82
USP39-204ENST00000409766 SH3RF2Q8TEC5 729 aa20.17■□□□□ 0.82
USP39-204ENST00000409766 CDKN2AIPNLQ96HQ2 116 aa20.17■□□□□ 0.82
USP39-204ENST00000409766 TCF7L2Q9NQB0 619 aa20.17■□□□□ 0.82
USP39-204ENST00000409766 NLE1Q9NVX2 485 aaPredicted RBP20.17■□□□□ 0.82
USP39-204ENST00000409766 CORO1CQ9ULV4 474 aaPredicted RBP20.17■□□□□ 0.82
USP39-204ENST00000409766 SEC23IPQ9Y6Y8 1000 aaKnown RBP20.17■□□□□ 0.82
USP39-204ENST00000409766 NEMP2A6NFY4 417 aa20.17■□□□□ 0.82
USP39-204ENST00000409766 E9PBE3 544 aa20.17■□□□□ 0.82
USP39-204ENST00000409766 SLCO1B7G3V0H7 640 aa20.17■□□□□ 0.82
USP39-204ENST00000409766 ZBTB14O43829 449 aa20.17■□□□□ 0.82
USP39-204ENST00000409766 GREM1O60565 184 aa20.17■□□□□ 0.82
USP39-204ENST00000409766 KLHL41O60662 606 aa20.17■□□□□ 0.82
USP39-204ENST00000409766 RBP1P09455 135 aa20.17■□□□□ 0.82
USP39-204ENST00000409766 ITGB8P26012 769 aa20.17■□□□□ 0.82
USP39-204ENST00000409766 WDR5P61964 334 aaKnown RBP20.17■□□□□ 0.82
USP39-204ENST00000409766 ZXDBP98169 803 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms