RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 HDAC10Q969S8 669 aa3.73□□□□□ -1.81
RTN4-208ENST00000404909 ISG20Q96AZ6 181 aaKnown RBP3.73□□□□□ -1.81
RTN4-208ENST00000404909 DNAJC1Q96KC8 554 aaKnown RBP3.73□□□□□ -1.81
RTN4-208ENST00000404909 MRGPRX3Q96LB0 322 aa3.73□□□□□ -1.81
RTN4-208ENST00000404909 TBATAQ96M53 351 aa3.73□□□□□ -1.81
RTN4-208ENST00000404909 GPR63Q9BZJ6 419 aa3.73□□□□□ -1.81
RTN4-208ENST00000404909 CEP44Q9C0F1 390 aa3.73□□□□□ -1.81
RTN4-208ENST00000404909 FBRSL1Q9HCM7 1045 aaKnown RBP3.73□□□□□ -1.81
RTN4-208ENST00000404909 SLC27A6Q9Y2P4 619 aa3.73□□□□□ -1.81
RTN4-208ENST00000404909 MIA3Q5JRA6 1907 aa3.73□□□□□ -1.81
RTN4-208ENST00000404909 C1orf232A0A0U1RR37 186 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 OR51F1A6NGY5 319 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 TRIM49D1C9J1S8 452 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 TRAFD1O14545 582 aaPredicted RBP3.72□□□□□ -1.81
RTN4-208ENST00000404909 LDB2O43679 373 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 SPAG7O75391 227 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 LEFTY1O75610 366 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 KRT37O76014 449 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 CRTAMO95727 393 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 GSRP00390 522 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 MT-ND3P03897 115 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 ASLP04424 464 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 ALADP13716 330 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 BRAFP15056 766 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 KRT4P19013 534 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 ARSDP51689 593 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 SEC13P55735 322 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 PDE1BQ01064 536 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 CBLBQ13191 982 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 MSLNQ13421 630 aaPredicted RBP3.72□□□□□ -1.81
RTN4-208ENST00000404909 ZNF234Q14588 700 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 COL19A1Q14993 1142 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 RALGPS1Q5JS13 557 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 TEDDM1Q5T9Z0 273 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 LGSNQ5TDP6 509 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 PDPK2PQ6A1A2 396 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 ZNF470Q6ECI4 717 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 KIAA0907Q7Z7F0 614 aaPredicted RBP3.72□□□□□ -1.81
RTN4-208ENST00000404909 LDB1Q86U70 411 aaPredicted RBP3.72□□□□□ -1.81
RTN4-208ENST00000404909 ZSWIM9Q86XI8 627 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 TDRPQ86YL5 185 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 RIBC1Q8N443 379 aaPredicted RBP3.72□□□□□ -1.81
RTN4-208ENST00000404909 ANKRD42Q8N9B4 389 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 OR4K2Q8NGD2 314 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 OR13J1Q8NGT2 312 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 FRS2Q8WU20 508 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 PTCD2Q8WV60 388 aaKnown RBP3.72□□□□□ -1.81
RTN4-208ENST00000404909 UCMAQ8WVF2 138 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 HLA-CQ95604 372 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 TLCD1Q96CP7 247 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 KLHL32Q96NJ5 620 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 HEPHQ9BQS7 1158 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 TRABDQ9H4I3 376 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 SUV39H2Q9H5I1 410 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 PPCSQ9HAB8 311 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 KCNK12Q9HB15 430 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 MLXIPLQ9NP71 852 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 TREX1Q9NSU2 369 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 CACNA2D2Q9NY47 1150 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 EPS15L1Q9UBC2 864 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 LGALS13Q9UHV8 139 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 NUP210Q8TEM1 1887 aaPredicted RBP3.72□□□□□ -1.81
RTN4-208ENST00000404909 MROH6A6NGR9 719 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 KPNA3O00505 521 aaPredicted RBP3.72□□□□□ -1.81
RTN4-208ENST00000404909 STX7O15400 261 aaKnown RBP3.72□□□□□ -1.81
RTN4-208ENST00000404909 MBTPS2O43462 519 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 KRT38O76015 456 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 APODP05090 189 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 EPHX1P07099 455 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 SRPRAP08240 638 aaKnown RBP3.72□□□□□ -1.81
RTN4-208ENST00000404909 SNRPAP09012 282 aaKnown RBP3.72□□□□□ -1.81
RTN4-208ENST00000404909 ARNTP27540 789 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 GRIA2P42262 883 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 ARCN1P48444 511 aaKnown RBP3.72□□□□□ -1.81
RTN4-208ENST00000404909 GALK1P51570 392 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 PPP2R2AP63151 447 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 MPP1Q00013 466 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 SMAD4Q13485 552 aaKnown RBP3.72□□□□□ -1.81
RTN4-208ENST00000404909 SLC14A2Q15849 920 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 NEPROQ6NW34 567 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 PACS1Q6VY07 963 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 GDPD4Q6W3E5 623 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 NUDT18Q6ZVK8 323 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 NLRP9Q7RTR0 991 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 TAX1BP1Q86VP1 789 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 CHPFQ8IZ52 775 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 PIH1D2Q8WWB5 315 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 SMC6Q96SB8 1091 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 ACOX2Q99424 681 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 P2RY13Q9BPV8 354 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 DHRS4Q9BTZ2 278 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 MRM3Q9HC36 420 aaKnown RBP3.72□□□□□ -1.81
RTN4-208ENST00000404909 HEBP1Q9NRV9 189 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 ADAM21Q9UKJ8 722 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 A0A0J9YYE9 177 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 TMEM120BA0PK00 339 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 PALM2-AKAP2B1ALY0 433 aaPredicted RBP3.72□□□□□ -1.81
RTN4-208ENST00000404909 ARNTLO00327 626 aa3.72□□□□□ -1.81
RTN4-208ENST00000404909 HTRA2O43464 458 aaPredicted RBP3.72□□□□□ -1.81
RTN4-208ENST00000404909 TIMM44O43615 452 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms