RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 CA5BQ9Y2D0 317 aa21.83■■□□□ 1.09
CLN3-207ENST00000395653 PPIL1Q9Y3C6 166 aa21.83■■□□□ 1.09
CLN3-207ENST00000395653 DOCK9Q9BZ29 2069 aa21.83■■□□□ 1.08
CLN3-207ENST00000395653 TM4SF5O14894 197 aa21.82■■□□□ 1.08
CLN3-207ENST00000395653 RAD51BO15315 384 aa21.82■■□□□ 1.08
CLN3-207ENST00000395653 MMP2P08253 660 aa21.82■■□□□ 1.08
CLN3-207ENST00000395653 C6P13671 934 aa21.82■■□□□ 1.08
CLN3-207ENST00000395653 CD86P42081 329 aa21.82■■□□□ 1.08
CLN3-207ENST00000395653 LIG3P49916 1009 aa21.82■■□□□ 1.08
CLN3-207ENST00000395653 SKOR1P84550 965 aa21.82■■□□□ 1.08
CLN3-207ENST00000395653 KLF1Q13351 362 aaPredicted RBP21.82■■□□□ 1.08
CLN3-207ENST00000395653 AGERQ15109 404 aa21.82■■□□□ 1.08
CLN3-207ENST00000395653 SLC14A2Q15849 920 aa21.82■■□□□ 1.08
CLN3-207ENST00000395653 ZNF423Q2M1K9 1284 aa21.82■■□□□ 1.08
CLN3-207ENST00000395653 KYAT3Q6YP21 454 aaKnown RBP21.82■■□□□ 1.08
CLN3-207ENST00000395653 NDUFAF2Q8N183 169 aa21.82■■□□□ 1.08
CLN3-207ENST00000395653 TTC13Q8NBP0 860 aa21.82■■□□□ 1.08
CLN3-207ENST00000395653 SCRN2Q96FV2 425 aa21.82■■□□□ 1.08
CLN3-207ENST00000395653 KLHDC7BQ96G42 594 aa21.82■■□□□ 1.08
CLN3-207ENST00000395653 GDF3Q9NR23 364 aa21.82■■□□□ 1.08
CLN3-207ENST00000395653 B4GALT6Q9UBX8 382 aa21.82■■□□□ 1.08
CLN3-207ENST00000395653 DNAH14Q0VDD8 3507 aa21.82■■□□□ 1.08
CLN3-207ENST00000395653 A6NNZ2 444 aa21.81■■□□□ 1.08
CLN3-207ENST00000395653 H0Y8X5 98 aa21.81■■□□□ 1.08
CLN3-207ENST00000395653 H7C0C1 242 aa21.81■■□□□ 1.08
CLN3-207ENST00000395653 PDHA1P08559 390 aa21.81■■□□□ 1.08
CLN3-207ENST00000395653 ZNF883P0CG24 379 aa21.81■■□□□ 1.08
CLN3-207ENST00000395653 CYP2A6P11509 494 aaPredicted RBP21.81■■□□□ 1.08
CLN3-207ENST00000395653 ATP5OP48047 213 aa21.81■■□□□ 1.08
CLN3-207ENST00000395653 EIF3EP60228 445 aaKnown RBP21.81■■□□□ 1.08
CLN3-207ENST00000395653 RPL26P61254 145 aaKnown RBP21.81■■□□□ 1.08
CLN3-207ENST00000395653 SEMG2Q02383 582 aa21.81■■□□□ 1.08
CLN3-207ENST00000395653 SLC14A1Q13336 389 aa21.81■■□□□ 1.08
CLN3-207ENST00000395653 UAP1L1Q3KQV9 507 aa21.81■■□□□ 1.08
CLN3-207ENST00000395653 SEL1L2Q5TEA6 688 aa21.81■■□□□ 1.08
CLN3-207ENST00000395653 LIPIQ6XZB0 460 aa21.81■■□□□ 1.08
CLN3-207ENST00000395653 USP45Q70EL2 814 aa21.81■■□□□ 1.08
CLN3-207ENST00000395653 CDKL3Q8IVW4 592 aaPredicted RBP21.81■■□□□ 1.08
CLN3-207ENST00000395653 CENPTQ96BT3 561 aa21.81■■□□□ 1.08
CLN3-207ENST00000395653 BMFQ96LC9 184 aa21.81■■□□□ 1.08
CLN3-207ENST00000395653 FERMT1Q9BQL6 677 aa21.81■■□□□ 1.08
CLN3-207ENST00000395653 CARD9Q9H257 536 aa21.81■■□□□ 1.08
CLN3-207ENST00000395653 GLOD4Q9HC38 313 aa21.81■■□□□ 1.08
CLN3-207ENST00000395653 PCDH9Q9HC56 1237 aa21.81■■□□□ 1.08
CLN3-207ENST00000395653 RPL26L1Q9UNX3 145 aaKnown RBP21.81■■□□□ 1.08
CLN3-207ENST00000395653 FPGTO14772 594 aa21.8■■□□□ 1.08
CLN3-207ENST00000395653 ZSCAN12O43309 604 aa21.8■■□□□ 1.08
CLN3-207ENST00000395653 DFNA5O60443 496 aa21.8■■□□□ 1.08
CLN3-207ENST00000395653 ZNF189O75820 626 aaPredicted RBP21.8■■□□□ 1.08
CLN3-207ENST00000395653 ELFN1P0C7U0 828 aa21.8■■□□□ 1.08
CLN3-207ENST00000395653 THEGLP0DJG4 465 aa21.8■■□□□ 1.08
CLN3-207ENST00000395653 RBP3P10745 1247 aa21.8■■□□□ 1.08
CLN3-207ENST00000395653 RBL1P28749 1068 aa21.8■■□□□ 1.08
CLN3-207ENST00000395653 VIPR1P32241 457 aa21.8■■□□□ 1.08
CLN3-207ENST00000395653 CLDN2P57739 230 aa21.8■■□□□ 1.08
CLN3-207ENST00000395653 TADA1Q96BN2 335 aa21.8■■□□□ 1.08
CLN3-207ENST00000395653 RBM15Q96T37 977 aaKnown RBP eCLIP21.8■■□□□ 1.08
CLN3-207ENST00000395653 ERVMER34-1Q9H9K5 563 aa21.8■■□□□ 1.08
CLN3-207ENST00000395653 IL21RQ9HBE5 538 aa21.8■■□□□ 1.08
CLN3-207ENST00000395653 TRHDEQ9UKU6 1024 aa21.8■■□□□ 1.08
CLN3-207ENST00000395653 CHKBQ9Y259 395 aa21.8■■□□□ 1.08
CLN3-207ENST00000395653 POM121BA6NF01 834 aa21.8■■□□□ 1.08
CLN3-207ENST00000395653 LZTS3O60299 673 aaPredicted RBP21.8■■□□□ 1.08
CLN3-207ENST00000395653 PRLP01236 227 aa21.8■■□□□ 1.08
CLN3-207ENST00000395653 FAM182AQ5T1J6 154 aa21.8■■□□□ 1.08
CLN3-207ENST00000395653 SPATS2Q86XZ4 545 aaKnown RBP21.8■■□□□ 1.08
CLN3-207ENST00000395653 DCP2Q8IU60 420 aaKnown RBP21.8■■□□□ 1.08
CLN3-207ENST00000395653 ZNF567Q8N184 647 aa21.8■■□□□ 1.08
CLN3-207ENST00000395653 OXR1Q8N573 874 aa21.8■■□□□ 1.08
CLN3-207ENST00000395653 TP53I13Q8NBR0 393 aaPredicted RBP21.8■■□□□ 1.08
CLN3-207ENST00000395653 OR13H1Q8NG92 308 aa21.8■■□□□ 1.08
CLN3-207ENST00000395653 ELF4Q99607 663 aaPredicted RBP21.8■■□□□ 1.08
CLN3-207ENST00000395653 GPR27Q9NS67 375 aa21.8■■□□□ 1.08
CLN3-207ENST00000395653 KLHL8Q9P2G9 620 aaPredicted RBP21.8■■□□□ 1.08
CLN3-207ENST00000395653 FNDC3AQ9Y2H6 1198 aaKnown RBP21.8■■□□□ 1.08
CLN3-207ENST00000395653 COQ6Q9Y2Z9 468 aa21.8■■□□□ 1.08
CLN3-207ENST00000395653 A0A0J9YYE9 177 aa21.79■■□□□ 1.08
CLN3-207ENST00000395653 NPIPB15A6NHN6 443 aaPredicted RBP21.79■■□□□ 1.08
CLN3-207ENST00000395653 HEXIM1O94992 359 aaKnown RBP21.79■■□□□ 1.08
CLN3-207ENST00000395653 TRBC1P01850 177 aa21.79■■□□□ 1.08
CLN3-207ENST00000395653 CD68P34810 354 aaPredicted RBP21.79■■□□□ 1.08
CLN3-207ENST00000395653 EPHB1P54762 984 aa21.79■■□□□ 1.08
CLN3-207ENST00000395653 CNGA3Q16281 694 aa21.79■■□□□ 1.08
CLN3-207ENST00000395653 REXO1L1PQ8IX06 675 aa21.79■■□□□ 1.08
CLN3-207ENST00000395653 FAM118BQ9BPY3 351 aa21.79■■□□□ 1.08
CLN3-207ENST00000395653 TM7SF3Q9NS93 570 aa21.79■■□□□ 1.08
CLN3-207ENST00000395653 PCDHGB2Q9Y5G2 931 aa21.79■■□□□ 1.08
CLN3-207ENST00000395653 DCHS1Q96JQ0 3298 aa21.78■■□□□ 1.08
CLN3-207ENST00000395653 CAPN8A6NHC0 703 aa21.78■■□□□ 1.08
CLN3-207ENST00000395653 A8MX80 341 aa21.78■■□□□ 1.08
CLN3-207ENST00000395653 PSMD11O00231 422 aa21.78■■□□□ 1.08
CLN3-207ENST00000395653 KCNK3O14649 394 aa21.78■■□□□ 1.08
CLN3-207ENST00000395653 CTPS1P17812 591 aa21.78■■□□□ 1.08
CLN3-207ENST00000395653 NFKB1P19838 968 aa21.78■■□□□ 1.08
CLN3-207ENST00000395653 LHCGRP22888 699 aa21.78■■□□□ 1.08
CLN3-207ENST00000395653 IGFALSP35858 605 aa21.78■■□□□ 1.08
CLN3-207ENST00000395653 RABIFP47224 123 aa21.78■■□□□ 1.08
CLN3-207ENST00000395653 CCT8P50990 548 aa21.78■■□□□ 1.08
CLN3-207ENST00000395653 PFN3P60673 137 aa21.78■■□□□ 1.08
CLN3-207ENST00000395653 LRRC14Q15048 493 aa21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms