RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 IKBKGQ9Y6K9 419 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 WASF2Q9Y6W5 498 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 MYOFQ9NZM1 2061 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 COL4A2P08572 1712 aa14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 EDDM13A0A1B0GTR0 161 aa14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 TTC34A8MYJ7 566 aa14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 H7C0S8 307 aa14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 KRT37O76014 449 aa14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 KRT38O76015 456 aa14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 PIGNO95427 931 aa14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 HNRNPLP14866 589 aaKnown RBP eCLIP14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 NR1D1P20393 614 aa14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 SLC18A1P54219 525 aa14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 KDSRQ06136 332 aa14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 SEPT6Q14141 434 aa14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 TMED2Q15363 201 aa14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 LEXMQ3ZCV2 418 aa14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 KCTD16Q68DU8 428 aa14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 PACS1Q6VY07 963 aa14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 TIFABQ6ZNK6 161 aa14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 RASSF3Q86WH2 238 aa14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 CTAGE3PQ8IX95 158 aa14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 OR6K2Q8NGY2 324 aa14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 GABPB2Q8TAK5 448 aaPredicted RBP14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 FAM76AQ8TAV0 307 aa14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 BLOC1S5Q8TDH9 187 aa14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 MYLIPQ8WY64 445 aa14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 PTPRN2Q92932 1015 aa14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 ISL2Q96A47 359 aa14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 MSANTD3Q96H12 275 aa14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 FAM161BQ96MY7 647 aa14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 GUCD1Q96NT3 240 aa14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 CENPHQ9H3R5 247 aa14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 C20orf96Q9NUD7 363 aaPredicted RBP14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 NLE1Q9NVX2 485 aaPredicted RBP14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 SLC2A6Q9UGQ3 507 aa14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 PHTF1Q9UMS5 762 aa14.98□□□□□ -0.01
CCDC88C-202ENST00000334448 C2orf81A6NN90 581 aa14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 RPP40O75818 363 aaKnown RBP14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 APODP05090 189 aa14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 SNRPAP09012 282 aaKnown RBP14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 ERVK-10P10266 1014 aa14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 GLULP15104 373 aa14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 LPOP22079 712 aaPredicted RBP14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 TNFRSF4P43489 277 aa14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 ELAVL3Q14576 367 aaKnown RBP14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 CDKN3Q16667 212 aa14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 UGP2Q16851 508 aa14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 AAK1Q2M2I8 961 aa14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 ACCSLQ4AC99 568 aa14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 HSP90AA5PQ58FG0 334 aa14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 GRTP1Q5TC63 336 aa14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 GDPD4Q6W3E5 623 aa14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 GLT6D1Q7Z4J2 308 aa14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 ZSWIM9Q86XI8 627 aa14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 CHST14Q8NCH0 376 aa14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 ST13P5Q8NFI4 369 aaPredicted RBP14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 MDGA1Q8NFP4 955 aa14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 GPR150Q8NGU9 434 aa14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 CALML6Q8TD86 181 aa14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 KCNV2Q8TDN2 545 aa14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 CSGALNACT1Q8TDX6 532 aa14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 HLA-CQ95604 372 aa14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 ALKBH8Q96BT7 664 aaKnown RBP14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 SCRN2Q96FV2 425 aa14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 C8orf33Q9H7E9 229 aaPredicted RBP14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 CNOT10Q9H9A5 744 aaKnown RBP14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 MKS1Q9NXB0 559 aa14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 BCCIPQ9P287 314 aaKnown RBP eCLIP14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 GGT7Q9UJ14 662 aa14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 HCN2Q9UL51 889 aa14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 ZNF711Q9Y462 761 aa14.97□□□□□ -0.01
CCDC88C-202ENST00000334448 HMX2A2RU54 273 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 TBC1D3BA6NDS4 549 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 UGT1A9O60656 530 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 PIAS1O75925 651 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 VAPBO95292 243 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 PRKCGP05129 697 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 FOSL2P15408 326 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 GKP32189 559 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 CTHP32929 405 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 HMGCLP35914 325 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 ARSDP51689 593 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 LIMK2P53671 638 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 EPHB1P54762 984 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 POLR2LP62875 67 aaKnown RBP14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 PPP2R2AP63151 447 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 ZNF234Q14588 700 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 PUS10Q3MIT2 529 aaKnown RBP14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 C9orf64Q5T6V5 341 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 NAIF1Q69YI7 327 aaPredicted RBP14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 NEPROQ6NW34 567 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 SH2D5Q6ZV89 423 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 USP45Q70EL2 814 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 RALGPS2Q86X27 583 aaPredicted RBP14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 NDUFAF2Q8N183 169 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 RYBPQ8N488 228 aaPredicted RBP14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 C2CD4AQ8NCU7 369 aaPredicted RBP14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 TMIEQ8NEW7 156 aa14.96□□□□□ -0.01
CCDC88C-202ENST00000334448 ZBTB9Q96C00 473 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms