RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 NRP2O60462 931 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 PRDX6P30041 224 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 KCTD19Q17RG1 926 aaPredicted RBP11.56□□□□□ -0.56
VPS39-201ENST00000318006 LBX2Q6XYB7 198 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 CHMP1BQ7LBR1 199 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 IZUMO1Q8IYV9 350 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 TNS4Q8IZW8 715 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 OR52K1Q8NGK4 314 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 OR2T34Q8NGX1 318 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 OR2T3Q8NH03 318 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 STARD8Q92502 1023 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 ZNF570Q96NI8 536 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 ST6GALNAC4Q9H4F1 302 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 ALG9Q9H6U8 611 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 SEMA4BQ9NPR2 832 aaPredicted RBP11.56□□□□□ -0.56
VPS39-201ENST00000318006 LNPEPQ9UIQ6 1025 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 MAPRE3Q9UPY8 281 aa11.56□□□□□ -0.56
VPS39-201ENST00000318006 UBE2QL1A1L167 161 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 BTN3A1O00481 513 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 PCNAP12004 261 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 GRK3P35626 688 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 CRADDP78560 199 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 MAP2K5Q13163 448 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 HSDL1Q3SXM5 330 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 PCID2Q5JVF3 399 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 RETSATQ6NUM9 610 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 ZNF572Q7Z3I7 529 aaPredicted RBP11.55□□□□□ -0.56
VPS39-201ENST00000318006 ERI1Q8IV48 349 aaKnown RBP11.55□□□□□ -0.56
VPS39-201ENST00000318006 SLC41A1Q8IVJ1 513 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 PARP8Q8N3A8 854 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 ZNF671Q8TAW3 534 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 DQX1Q8TE96 717 aaKnown RBP11.55□□□□□ -0.56
VPS39-201ENST00000318006 NACC2Q96BF6 587 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 FAM84AQ96KN4 292 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 EMILIN2Q9BXX0 1053 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 MRPL9Q9BYD2 267 aaKnown RBP11.55□□□□□ -0.56
VPS39-201ENST00000318006 MIEF1Q9NQG6 463 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 SNX15Q9NRS6 342 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 ABCC13Q9NSE7 274 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 SMPD3Q9NY59 655 aaPredicted RBP11.55□□□□□ -0.56
VPS39-201ENST00000318006 HGFP14210 728 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 HOXB6P17509 224 aaKnown RBP11.55□□□□□ -0.56
VPS39-201ENST00000318006 GRM5P41594 1212 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 ENPEPQ07075 957 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 PRKG2Q13237 762 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 IL18R1Q13478 541 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 CARTPTQ16568 116 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 PFKFB4Q16877 469 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 ZNF544Q6NX49 715 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 ZNF549Q6P9A3 640 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 PCDHB18PQ96TA0 734 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 SP140LQ9H930 580 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 CMTM6Q9NX76 183 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 MORF4L1Q9UBU8 362 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 OR12D3Q9UGF7 316 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 MAGEL2Q9UJ55 1249 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 SLC25A13Q9UJS0 675 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 ITGAXP20702 1163 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 PSMB4P28070 264 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 CYP2C18P33260 490 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 MAPKAPK3Q16644 382 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 NDUFAF6Q330K2 333 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 ITIH5Q86UX2 942 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 TDRPQ86YL5 185 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 LRRC52Q8N7C0 313 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 PTGR2Q8N8N7 351 aaPredicted RBP11.55□□□□□ -0.56
VPS39-201ENST00000318006 MINDY2Q8NBR6 621 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 STAG3L4Q8TBR4 150 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 PNPT1Q8TCS8 783 aaKnown RBP11.55□□□□□ -0.56
VPS39-201ENST00000318006 KCTD4Q8WVF5 259 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 C18orf25Q96B23 403 aaPredicted RBP11.55□□□□□ -0.56
VPS39-201ENST00000318006 ATP13A1Q9HD20 1204 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 SSR3Q9UNL2 185 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 ZNF142P52746 1687 aaPredicted RBP11.55□□□□□ -0.56
VPS39-201ENST00000318006 EPB42P16452 691 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 ARF4P18085 180 aaPredicted RBP11.55□□□□□ -0.56
VPS39-201ENST00000318006 TAS2R40P59535 323 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 MRPS6P82932 125 aaKnown RBP11.55□□□□□ -0.56
VPS39-201ENST00000318006 DRAXINQ8NBI3 349 aaPredicted RBP11.55□□□□□ -0.56
VPS39-201ENST00000318006 LPCAT1Q8NF37 534 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 GPR20Q99678 358 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 PDGFDQ9GZP0 370 aaPredicted RBP11.55□□□□□ -0.56
VPS39-201ENST00000318006 SENP6Q9GZR1 1112 aaPredicted RBP11.55□□□□□ -0.56
VPS39-201ENST00000318006 DYRK1BQ9Y463 629 aa11.55□□□□□ -0.56
VPS39-201ENST00000318006 TNPO3Q9Y5L0 923 aaKnown RBP11.55□□□□□ -0.56
VPS39-201ENST00000318006 TTLL13PA6NNM8 815 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 G3V2T6 193 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 PLOD3O60568 738 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 TBX10O75333 385 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 IFNGR2P38484 337 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 PIK3CGP48736 1102 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 ACTR3P61158 418 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 COPZ1P61923 177 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 INSCQ1MX18 579 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 ADGRD1Q6QNK2 874 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 MACC1Q6ZN28 852 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 CDK20Q8IZL9 346 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 LRRC57Q8N9N7 239 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 MTMR14Q8NCE2 650 aa11.54□□□□□ -0.56
VPS39-201ENST00000318006 PPP1R13LQ8WUF5 828 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms