RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 ACOT12Q8WYK0 555 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 TCF12Q99081 682 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 XPNPEP3Q9NQH7 507 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 SAMHD1Q9Y3Z3 626 aaKnown RBP9.36□□□□□ -0.91
CUX1-201ENST00000292535 DLC1Q96QB1 1528 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 ZNF208O43345 1280 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 SLC12A3P55017 1021 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 RASGEF1BQ0VAM2 473 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 NAA30Q147X3 362 aaPredicted RBP9.36□□□□□ -0.91
CUX1-201ENST00000292535 SNX32Q86XE0 403 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 PIK3C3Q8NEB9 887 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 GPR156Q8NFN8 814 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 GPER1Q99527 375 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 OR12D3Q9UGF7 316 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 TCEA3O75764 348 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 SEC24AO95486 1093 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 NRG3P56975 720 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 RAB10P61026 200 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 TEAD4Q15561 434 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 MCEMP1Q8IX19 187 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 SIX5Q8N196 739 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 KCNF1Q9H3M0 494 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 TIMM13Q9Y5L4 95 aaPredicted RBP9.36□□□□□ -0.91
CUX1-201ENST00000292535 FKBP1AP62942 108 aaKnown RBP9.36□□□□□ -0.91
CUX1-201ENST00000292535 BMPR2Q13873 1038 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 TAPT1Q6NXT6 567 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 PTGR2Q8N8N7 351 aaPredicted RBP9.36□□□□□ -0.91
CUX1-201ENST00000292535 CERKQ8TCT0 537 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 CDRT15Q96T59 188 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 FUT8Q9BYC5 575 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 DHRS7Q9Y394 339 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 SAGE2PA6NJ88 616 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 SIGLEC16A6NMB1 481 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 SERPINA1P01009 418 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 FGF1P05230 155 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 PRKG2Q13237 762 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 APTXQ7Z2E3 356 aaKnown RBP9.36□□□□□ -0.91
CUX1-201ENST00000292535 UNC13BO14795 1591 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 RECQL4O94761 1208 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 ZCCHC12Q6PEW1 402 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 GAS2L1Q99501 681 aaPredicted RBP9.35□□□□□ -0.91
CUX1-201ENST00000292535 GNEQ9Y223 722 aaKnown RBP9.35□□□□□ -0.91
CUX1-201ENST00000292535 GIT1Q9Y2X7 761 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 SLC28A2O43868 658 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 UGT2B11O75310 529 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 SAGP10523 405 aaPredicted RBP9.35□□□□□ -0.91
CUX1-201ENST00000292535 XKR6Q5GH73 641 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 ANXA8L1Q5VT79 327 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 LRRC38Q5VT99 294 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 TCEAL6Q6IPX3 200 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 MSANTD1Q6ZTZ1 278 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 HPS6Q86YV9 775 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 TRPV1Q8NER1 839 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 ADAM32Q8TC27 787 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 ACMSDQ8TDX5 336 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 CAPN6Q9Y6Q1 641 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 COL6A6A6NMZ7 2263 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 OR6C75A6NL08 312 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 TRAP1Q12931 704 aaKnown RBP9.35□□□□□ -0.91
CUX1-201ENST00000292535 SLC15A2Q16348 729 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 ARHGAP22Q7Z5H3 698 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 SLC47A1Q96FL8 570 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 PANX1Q96RD7 426 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 HEBP2Q9Y5Z4 205 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 DOCK9Q9BZ29 2069 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 ARHGEF33A8MVX0 844 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 GLI1P08151 1106 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 ABATP80404 500 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 WSCD1Q658N2 575 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 TPGS1Q6ZTW0 290 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 NUDT5Q9UKK9 219 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 ITGAVP06756 1048 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 BMT2Q1RMZ1 405 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 TSEN15Q8WW01 171 aaKnown RBP9.35□□□□□ -0.91
CUX1-201ENST00000292535 COX4I2Q96KJ9 171 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 POLLQ9UGP5 575 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 LOC110117498-PIK3R3F6TDL0 507 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 CBX6O95503 412 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 ATP4AP20648 1035 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 ADRA1DP25100 572 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 BUD31P41223 144 aaPredicted RBP9.35□□□□□ -0.91
CUX1-201ENST00000292535 PRR5P85299 388 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 DLG1Q12959 904 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 PGLYRP2Q96PD5 576 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 PORCNQ9H237 461 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 SEMA3GQ9NS98 782 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 BBIP1A8MTZ0 92 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 CDC40O60508 579 aaKnown RBP eCLIP9.35□□□□□ -0.91
CUX1-201ENST00000292535 CSDE1O75534 798 aaKnown RBP9.35□□□□□ -0.91
CUX1-201ENST00000292535 GRIA4P48058 902 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 ALDH5A1P51649 535 aaPredicted RBP9.35□□□□□ -0.91
CUX1-201ENST00000292535 FCHO2Q0JRZ9 810 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 SULT1C3Q6IMI6 304 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 NET1Q7Z628 596 aaPredicted RBP9.35□□□□□ -0.91
CUX1-201ENST00000292535 BHLHE41Q9C0J9 482 aaPredicted RBP9.35□□□□□ -0.91
CUX1-201ENST00000292535 MTRRQ9UBK8 725 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 NR2F6P10588 404 aa9.35□□□□□ -0.91
CUX1-201ENST00000292535 CDH5P33151 784 aaPredicted RBP9.35□□□□□ -0.91
CUX1-201ENST00000292535 EIF2S3P41091 472 aaKnown RBP9.35□□□□□ -0.91
CUX1-201ENST00000292535 USP46P62068 366 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms