RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 SMARCAL1Q9NZC9 954 aa16.89■□□□□ 0.3
SDCBP-201ENST00000260130 SLCO1B1Q9Y6L6 691 aa16.89■□□□□ 0.3
SDCBP-201ENST00000260130 CFAP54Q96N23 3096 aa16.89■□□□□ 0.29
SDCBP-201ENST00000260130 TNRC6BQ9UPQ9 1833 aaKnown RBP16.89■□□□□ 0.29
SDCBP-201ENST00000260130 PRR5-ARHGAP8B1AHC4 643 aa16.89■□□□□ 0.29
SDCBP-201ENST00000260130 NEMP1O14524 444 aa16.89■□□□□ 0.29
SDCBP-201ENST00000260130 AREL1O15033 823 aa16.89■□□□□ 0.29
SDCBP-201ENST00000260130 HLA-DQB2P05538 268 aa16.89■□□□□ 0.29
SDCBP-201ENST00000260130 NUDT1P36639 197 aa16.89■□□□□ 0.29
SDCBP-201ENST00000260130 PRKD1Q15139 912 aaPredicted RBP16.89■□□□□ 0.29
SDCBP-201ENST00000260130 ZC3H18Q86VM9 953 aaKnown RBP16.89■□□□□ 0.29
SDCBP-201ENST00000260130 GDF3Q9NR23 364 aa16.89■□□□□ 0.29
SDCBP-201ENST00000260130 ATP8A1Q9Y2Q0 1164 aa16.89■□□□□ 0.29
SDCBP-201ENST00000260130 SOCS5O75159 536 aa16.88■□□□□ 0.29
SDCBP-201ENST00000260130 CORO7P57737 925 aa16.88■□□□□ 0.29
SDCBP-201ENST00000260130 POLR2LP62875 67 aaKnown RBP16.88■□□□□ 0.29
SDCBP-201ENST00000260130 RPS21P63220 83 aaKnown RBP16.88■□□□□ 0.29
SDCBP-201ENST00000260130 ZBTB17Q13105 803 aa16.88■□□□□ 0.29
SDCBP-201ENST00000260130 RPS6KA1Q15418 735 aa16.88■□□□□ 0.29
SDCBP-201ENST00000260130 LRRC73Q5JTD7 316 aa16.88■□□□□ 0.29
SDCBP-201ENST00000260130 ZSWIM9Q86XI8 627 aa16.88■□□□□ 0.29
SDCBP-201ENST00000260130 PAF1Q8N7H5 531 aa16.88■□□□□ 0.29
SDCBP-201ENST00000260130 CNTD1Q8N815 330 aa16.88■□□□□ 0.29
SDCBP-201ENST00000260130 CAPN10Q9HC96 672 aa16.88■□□□□ 0.29
SDCBP-201ENST00000260130 TM9SF3Q9HD45 589 aa16.88■□□□□ 0.29
SDCBP-201ENST00000260130 SEPT10Q9P0V9 454 aa16.88■□□□□ 0.29
SDCBP-201ENST00000260130 ZFR2Q9UPR6 939 aaKnown RBP16.88■□□□□ 0.29
SDCBP-201ENST00000260130 ITM2BQ9Y287 266 aa16.88■□□□□ 0.29
SDCBP-201ENST00000260130 A0A1W2PQ67 120 aa16.88■□□□□ 0.29
SDCBP-201ENST00000260130 SPINT1O43278 529 aa16.88■□□□□ 0.29
SDCBP-201ENST00000260130 HTRA2O43464 458 aaPredicted RBP16.88■□□□□ 0.29
SDCBP-201ENST00000260130 ITIH2P19823 946 aa16.88■□□□□ 0.29
SDCBP-201ENST00000260130 XRCC4Q13426 336 aa16.88■□□□□ 0.29
SDCBP-201ENST00000260130 AASDHQ4L235 1098 aaPredicted RBP16.88■□□□□ 0.29
SDCBP-201ENST00000260130 SETMARQ53H47 684 aaPredicted RBP16.88■□□□□ 0.29
SDCBP-201ENST00000260130 KIAA1161Q6NSJ0 714 aa16.88■□□□□ 0.29
SDCBP-201ENST00000260130 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.88■□□□□ 0.29
SDCBP-201ENST00000260130 MS4A14Q96JA4 679 aa16.88■□□□□ 0.29
SDCBP-201ENST00000260130 GGT7Q9UJ14 662 aa16.88■□□□□ 0.29
SDCBP-201ENST00000260130 DMTF1Q9Y222 760 aa16.88■□□□□ 0.29
SDCBP-201ENST00000260130 LNP1A1A4G5 178 aa16.87■□□□□ 0.29
SDCBP-201ENST00000260130 UPK3BL1B0FP48 263 aa16.87■□□□□ 0.29
SDCBP-201ENST00000260130 HACD1B0YJ81 288 aa16.87■□□□□ 0.29
SDCBP-201ENST00000260130 UPK3BL2E5RIL1 263 aa16.87■□□□□ 0.29
SDCBP-201ENST00000260130 CES2O00748 559 aa16.87■□□□□ 0.29
SDCBP-201ENST00000260130 AFF3P51826 1226 aaKnown RBP16.87■□□□□ 0.29
SDCBP-201ENST00000260130 RACK1P63244 317 aaKnown RBP16.87■□□□□ 0.29
SDCBP-201ENST00000260130 DSC2Q02487 901 aa16.87■□□□□ 0.29
SDCBP-201ENST00000260130 LMNB2Q03252 620 aa16.87■□□□□ 0.29
SDCBP-201ENST00000260130 ELP6Q0PNE2 266 aa16.87■□□□□ 0.29
SDCBP-201ENST00000260130 NOMO1Q15155 1222 aa16.87■□□□□ 0.29
SDCBP-201ENST00000260130 ZNF284Q2VY69 593 aa16.87■□□□□ 0.29
SDCBP-201ENST00000260130 TMEM259Q4ZIN3 620 aa16.87■□□□□ 0.29
SDCBP-201ENST00000260130 TEX44Q53QW1 395 aa16.87■□□□□ 0.29
SDCBP-201ENST00000260130 SEL1L3Q68CR1 1132 aa16.87■□□□□ 0.29
SDCBP-201ENST00000260130 ARRDC2Q8TBH0 407 aa16.87■□□□□ 0.29
SDCBP-201ENST00000260130 ACTL9Q8TC94 416 aa16.87■□□□□ 0.29
SDCBP-201ENST00000260130 PDCD6IPQ8WUM4 868 aaKnown RBP16.87■□□□□ 0.29
SDCBP-201ENST00000260130 SPOCK2Q92563 424 aa16.87■□□□□ 0.29
SDCBP-201ENST00000260130 SERAC1Q96JX3 654 aa16.87■□□□□ 0.29
SDCBP-201ENST00000260130 CEP41Q9BYV8 373 aa16.87■□□□□ 0.29
SDCBP-201ENST00000260130 PCDH12Q9NPG4 1184 aa16.87■□□□□ 0.29
SDCBP-201ENST00000260130 RXFP3Q9NSD7 469 aa16.87■□□□□ 0.29
SDCBP-201ENST00000260130 SHROOM3Q8TF72 1996 aa16.87■□□□□ 0.29
SDCBP-201ENST00000260130 MTSS1O43312 755 aa16.87■□□□□ 0.29
SDCBP-201ENST00000260130 HEXIM1O94992 359 aaKnown RBP16.87■□□□□ 0.29
SDCBP-201ENST00000260130 MRPS25P82663 173 aaKnown RBP16.87■□□□□ 0.29
SDCBP-201ENST00000260130 SKOR1P84550 965 aa16.87■□□□□ 0.29
SDCBP-201ENST00000260130 OTUD4Q01804 1114 aaKnown RBP16.87■□□□□ 0.29
SDCBP-201ENST00000260130 NIPAL4Q0D2K0 466 aa16.87■□□□□ 0.29
SDCBP-201ENST00000260130 TRAF2Q12933 501 aa16.87■□□□□ 0.29
SDCBP-201ENST00000260130 ERAP2Q6P179 960 aa16.87■□□□□ 0.29
SDCBP-201ENST00000260130 KLK6Q92876 244 aa16.87■□□□□ 0.29
SDCBP-201ENST00000260130 AGAP3Q96P47 875 aa16.87■□□□□ 0.29
SDCBP-201ENST00000260130 QKIQ96PU8 341 aaKnown RBP eCLIP16.87■□□□□ 0.29
SDCBP-201ENST00000260130 PCDHB9Q9Y5E1 797 aa16.87■□□□□ 0.29
SDCBP-201ENST00000260130 RAI2Q9Y5P3 530 aa16.87■□□□□ 0.29
SDCBP-201ENST00000260130 H7C0C1 242 aa16.86■□□□□ 0.29
SDCBP-201ENST00000260130 EIF3HO15372 352 aaKnown RBP eCLIP16.86■□□□□ 0.29
SDCBP-201ENST00000260130 SLC31A1O15431 190 aa16.86■□□□□ 0.29
SDCBP-201ENST00000260130 ATP5OP48047 213 aa16.86■□□□□ 0.29
SDCBP-201ENST00000260130 CSNK1EP49674 416 aaKnown RBP16.86■□□□□ 0.29
SDCBP-201ENST00000260130 SLC45A4Q5BKX6 768 aa16.86■□□□□ 0.29
SDCBP-201ENST00000260130 FAM182AQ5T1J6 154 aa16.86■□□□□ 0.29
SDCBP-201ENST00000260130 MREGQ8N565 214 aa16.86■□□□□ 0.29
SDCBP-201ENST00000260130 SLC6A18Q96N87 628 aa16.86■□□□□ 0.29
SDCBP-201ENST00000260130 SLC17A9Q9BYT1 436 aa16.86■□□□□ 0.29
SDCBP-201ENST00000260130 EPB41L5Q9HCM4 733 aa16.86■□□□□ 0.29
SDCBP-201ENST00000260130 FSCN3Q9NQT6 498 aa16.86■□□□□ 0.29
SDCBP-201ENST00000260130 IGLON5A6NGN9 336 aa16.85■□□□□ 0.29
SDCBP-201ENST00000260130 PRAMEF26H0Y7S4 382 aa16.85■□□□□ 0.29
SDCBP-201ENST00000260130 GDF9O60383 454 aa16.85■□□□□ 0.29
SDCBP-201ENST00000260130 SYPP08247 313 aa16.85■□□□□ 0.29
SDCBP-201ENST00000260130 ENGP17813 658 aa16.85■□□□□ 0.29
SDCBP-201ENST00000260130 PTPN3P26045 913 aa16.85■□□□□ 0.29
SDCBP-201ENST00000260130 GRIA4P48058 902 aa16.85■□□□□ 0.29
SDCBP-201ENST00000260130 KLF1Q13351 362 aaPredicted RBP16.85■□□□□ 0.29
SDCBP-201ENST00000260130 IHHQ14623 411 aa16.85■□□□□ 0.29
SDCBP-201ENST00000260130 TEAD4Q15561 434 aa16.85■□□□□ 0.29
SDCBP-201ENST00000260130 TMEM52BQ4KMG9 183 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms