RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 TRPV4Q9HBA0 871 aa16.96■□□□□ 0.31
CLN3-252ENST00000636907 PCMTD2Q9NV79 361 aa16.96■□□□□ 0.31
CLN3-252ENST00000636907 FBXO10Q9UK96 956 aa16.96■□□□□ 0.31
CLN3-252ENST00000636907 GMNCA6NCL1 334 aa16.95■□□□□ 0.3
CLN3-252ENST00000636907 ANKRD66B4E2M5 251 aa16.95■□□□□ 0.3
CLN3-252ENST00000636907 COPEO14579 308 aa16.95■□□□□ 0.3
CLN3-252ENST00000636907 AURKAO14965 403 aa16.95■□□□□ 0.3
CLN3-252ENST00000636907 TM9SF1O15321 606 aa16.95■□□□□ 0.3
CLN3-252ENST00000636907 PIGNO95427 931 aa16.95■□□□□ 0.3
CLN3-252ENST00000636907 ADH1CP00326 375 aa16.95■□□□□ 0.3
CLN3-252ENST00000636907 GABRB3P28472 473 aa16.95■□□□□ 0.3
CLN3-252ENST00000636907 SLC1A2P43004 574 aa16.95■□□□□ 0.3
CLN3-252ENST00000636907 ECT2LQ008S8 904 aa16.95■□□□□ 0.3
CLN3-252ENST00000636907 PDE1BQ01064 536 aa16.95■□□□□ 0.3
CLN3-252ENST00000636907 SULT2A1Q06520 285 aa16.95■□□□□ 0.3
CLN3-252ENST00000636907 ADAM15Q13444 863 aa16.95■□□□□ 0.3
CLN3-252ENST00000636907 MBLAC2Q68D91 279 aa16.95■□□□□ 0.3
CLN3-252ENST00000636907 FSTL4Q6MZW2 842 aa16.95■□□□□ 0.3
CLN3-252ENST00000636907 NEPROQ6NW34 567 aa16.95■□□□□ 0.3
CLN3-252ENST00000636907 C22orf39Q6P5X5 142 aa16.95■□□□□ 0.3
CLN3-252ENST00000636907 LVRNQ6Q4G3 990 aa16.95■□□□□ 0.3
CLN3-252ENST00000636907 CDHR3Q6ZTQ4 885 aa16.95■□□□□ 0.3
CLN3-252ENST00000636907 CAMK1DQ8IU85 385 aa16.95■□□□□ 0.3
CLN3-252ENST00000636907 TNS4Q8IZW8 715 aa16.95■□□□□ 0.3
CLN3-252ENST00000636907 AHI1Q8N157 1196 aa16.95■□□□□ 0.3
CLN3-252ENST00000636907 DCLK2Q8N568 766 aa16.95■□□□□ 0.3
CLN3-252ENST00000636907 MDGA1Q8NFP4 955 aa16.95■□□□□ 0.3
CLN3-252ENST00000636907 OR2AP1Q8NGE2 309 aa16.95■□□□□ 0.3
CLN3-252ENST00000636907 PEX13Q92968 403 aa16.95■□□□□ 0.3
CLN3-252ENST00000636907 HDAC10Q969S8 669 aa16.95■□□□□ 0.3
CLN3-252ENST00000636907 ISG20Q96AZ6 181 aaKnown RBP16.95■□□□□ 0.3
CLN3-252ENST00000636907 DNAJC1Q96KC8 554 aaKnown RBP16.95■□□□□ 0.3
CLN3-252ENST00000636907 PAIP2Q9BPZ3 127 aaKnown RBP16.95■□□□□ 0.3
CLN3-252ENST00000636907 FAM167BQ9BTA0 163 aa16.95■□□□□ 0.3
CLN3-252ENST00000636907 SLC17A7Q9P2U7 560 aa16.95■□□□□ 0.3
CLN3-252ENST00000636907 MTO1Q9Y2Z2 717 aaKnown RBP16.95■□□□□ 0.3
CLN3-252ENST00000636907 PCDHB9Q9Y5E1 797 aa16.95■□□□□ 0.3
CLN3-252ENST00000636907 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.94■□□□□ 0.3
CLN3-252ENST00000636907 SLC7A4O43246 635 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 HOXC11O43248 304 aaPredicted RBP16.94■□□□□ 0.3
CLN3-252ENST00000636907 TIMM44O43615 452 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 PGLSO95336 258 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 CRTAMO95727 393 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 AHSGP02765 367 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 CISD3P0C7P0 127 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 MAPK8P45983 427 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 SNRPD1P62314 119 aaKnown RBP16.94■□□□□ 0.3
CLN3-252ENST00000636907 TMPRSS15P98073 1019 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 GEN1Q17RS7 908 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 ZNF470Q6ECI4 717 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 TANGO2Q6ICL3 276 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 C12orf40Q86WS4 652 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 NDUFAF2Q8N183 169 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 RYBPQ8N488 228 aaPredicted RBP16.94■□□□□ 0.3
CLN3-252ENST00000636907 C2CD4AQ8NCU7 369 aaPredicted RBP16.94■□□□□ 0.3
CLN3-252ENST00000636907 OR13C4Q8NGS5 318 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 BCAS4Q8TDM0 211 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 MYLIPQ8WY64 445 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 ISL2Q96A47 359 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 MYO19Q96H55 970 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 VPS39Q96JC1 886 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 TBATAQ96M53 351 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 SRPK1Q96SB4 655 aaKnown RBP16.94■□□□□ 0.3
CLN3-252ENST00000636907 MFSD1Q9H3U5 465 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 EBF3Q9H4W6 596 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 ZNF576Q9H609 170 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 MKS1Q9NXB0 559 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 OBP2AQ9NY56 170 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 CLEC1BQ9P126 229 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 SLCO3A1Q9UIG8 710 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 CDH7Q9ULB5 785 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 RIMKLBQ9ULI2 386 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 GRID1Q9ULK0 1009 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 TRAFD1O14545 582 aaPredicted RBP16.94■□□□□ 0.3
CLN3-252ENST00000636907 BMP1P13497 986 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 HOXB8P17481 243 aaPredicted RBP16.94■□□□□ 0.3
CLN3-252ENST00000636907 POLR2EP19388 210 aaKnown RBP16.94■□□□□ 0.3
CLN3-252ENST00000636907 MAGEA12P43365 314 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 ZNF140P52738 457 aaPredicted RBP16.94■□□□□ 0.3
CLN3-252ENST00000636907 PRAMEP78395 509 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 IL9RQ01113 521 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 BCL2L1Q07817 233 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 PTPRRQ15256 657 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 TAF1AQ15573 450 aaPredicted RBP16.94■□□□□ 0.3
CLN3-252ENST00000636907 SEPT7Q16181 437 aaKnown RBP16.94■□□□□ 0.3
CLN3-252ENST00000636907 UGP2Q16851 508 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 ACCSLQ4AC99 568 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 ARMC12Q5T9G4 340 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 HHATQ5VTY9 493 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 GLT6D1Q7Z4J2 308 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 PTAR1Q7Z6K3 402 aaPredicted RBP16.94■□□□□ 0.3
CLN3-252ENST00000636907 ZC3HC1Q86WB0 502 aaKnown RBP16.94■□□□□ 0.3
CLN3-252ENST00000636907 CNPY4Q8N129 248 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 ACVR1CQ8NER5 493 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 OR6P1Q8NGX9 317 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 ACMSDQ8TDX5 336 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 STYXQ8WUJ0 223 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 PIH1D2Q8WWB5 315 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 VOPP1Q96AW1 172 aa16.94■□□□□ 0.3
CLN3-252ENST00000636907 ZNF317Q96PQ6 595 aaPredicted RBP16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms