RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 ATXN7O15265 892 aaPredicted RBP17.72■□□□□ 0.43
SHKBP1-223ENST00000600552 PRAMEF11O60813 436 aa17.72■□□□□ 0.43
SHKBP1-223ENST00000600552 RASGRP1O95267 797 aa17.72■□□□□ 0.43
SHKBP1-223ENST00000600552 HTR1BP28222 390 aa17.72■□□□□ 0.43
SHKBP1-223ENST00000600552 RGRP47804 291 aa17.72■□□□□ 0.43
SHKBP1-223ENST00000600552 AIF1P55008 147 aa17.72■□□□□ 0.43
SHKBP1-223ENST00000600552 MAMLD1Q13495 774 aa17.72■□□□□ 0.43
SHKBP1-223ENST00000600552 SPIDRQ14159 915 aa17.72■□□□□ 0.43
SHKBP1-223ENST00000600552 NCAPHQ15003 741 aa17.72■□□□□ 0.43
SHKBP1-223ENST00000600552 ELOCQ15369 112 aa17.72■□□□□ 0.43
SHKBP1-223ENST00000600552 ASIC2Q16515 512 aa17.72■□□□□ 0.43
SHKBP1-223ENST00000600552 ALG11Q2TAA5 492 aa17.72■□□□□ 0.43
SHKBP1-223ENST00000600552 TAF1BQ53T94 588 aaPredicted RBP17.72■□□□□ 0.43
SHKBP1-223ENST00000600552 ARHGAP36Q6ZRI8 547 aa17.72■□□□□ 0.43
SHKBP1-223ENST00000600552 CLEC17AQ6ZS10 378 aa17.72■□□□□ 0.43
SHKBP1-223ENST00000600552 IRF2BP2Q7Z5L9 587 aa17.72■□□□□ 0.43
SHKBP1-223ENST00000600552 ZSWIM9Q86XI8 627 aa17.72■□□□□ 0.43
SHKBP1-223ENST00000600552 KYQ8NBH2 561 aa17.72■□□□□ 0.43
SHKBP1-223ENST00000600552 TSEN2Q8NCE0 465 aaKnown RBP17.72■□□□□ 0.43
SHKBP1-223ENST00000600552 PCDH19Q8TAB3 1148 aa17.72■□□□□ 0.43
SHKBP1-223ENST00000600552 KCTD15Q96SI1 283 aaPredicted RBP17.72■□□□□ 0.43
SHKBP1-223ENST00000600552 CINPQ9BW66 212 aaPredicted RBP17.72■□□□□ 0.43
SHKBP1-223ENST00000600552 SUDS3Q9H7L9 328 aaPredicted RBP17.72■□□□□ 0.43
SHKBP1-223ENST00000600552 PARVAQ9NVD7 372 aa17.72■□□□□ 0.43
SHKBP1-223ENST00000600552 MYO1AQ9UBC5 1043 aa17.72■□□□□ 0.43
SHKBP1-223ENST00000600552 KLQ9UEF7 1012 aa17.72■□□□□ 0.43
SHKBP1-223ENST00000600552 MOSPD1Q9UJG1 213 aa17.72■□□□□ 0.43
SHKBP1-223ENST00000600552 ANKRD36A6QL64 1941 aa17.71■□□□□ 0.43
SHKBP1-223ENST00000600552 A0A1W2PNU3 283 aaPredicted RBP17.71■□□□□ 0.43
SHKBP1-223ENST00000600552 TTC24A2A3L6 582 aaPredicted RBP17.71■□□□□ 0.43
SHKBP1-223ENST00000600552 TMEM110-MUSTN1A8MSY1 372 aa17.71■□□□□ 0.43
SHKBP1-223ENST00000600552 RIOK3O14730 519 aaKnown RBP17.71■□□□□ 0.43
SHKBP1-223ENST00000600552 BLKP51451 505 aa17.71■□□□□ 0.43
SHKBP1-223ENST00000600552 HK3P52790 923 aa17.71■□□□□ 0.43
SHKBP1-223ENST00000600552 NDST2P52849 883 aa17.71■□□□□ 0.43
SHKBP1-223ENST00000600552 SRP54P61011 504 aaKnown RBP17.71■□□□□ 0.43
SHKBP1-223ENST00000600552 GRM3Q14832 879 aa17.71■□□□□ 0.43
SHKBP1-223ENST00000600552 NFATC4Q14934 902 aa17.71■□□□□ 0.43
SHKBP1-223ENST00000600552 ERMARDQ5T6L9 678 aa17.71■□□□□ 0.43
SHKBP1-223ENST00000600552 FSTL5Q8N475 847 aaPredicted RBP17.71■□□□□ 0.43
SHKBP1-223ENST00000600552 Q8N9G6 341 aaPredicted RBP17.71■□□□□ 0.43
SHKBP1-223ENST00000600552 PLA2G15Q8NCC3 412 aa17.71■□□□□ 0.43
SHKBP1-223ENST00000600552 NAT6Q93015 286 aa17.71■□□□□ 0.43
SHKBP1-223ENST00000600552 HIC2Q96JB3 615 aa17.71■□□□□ 0.43
SHKBP1-223ENST00000600552 PEBP4Q96S96 227 aa17.71■□□□□ 0.43
SHKBP1-223ENST00000600552 SNRNP25Q9BV90 132 aaKnown RBP17.71■□□□□ 0.43
SHKBP1-223ENST00000600552 EDEM3Q9BZQ6 932 aa17.71■□□□□ 0.43
SHKBP1-223ENST00000600552 TRIM7Q9C029 511 aa17.71■□□□□ 0.43
SHKBP1-223ENST00000600552 HSD3B7Q9H2F3 369 aa17.71■□□□□ 0.43
SHKBP1-223ENST00000600552 ATP13A3Q9H7F0 1226 aa17.71■□□□□ 0.43
SHKBP1-223ENST00000600552 PDFQ9HBH1 243 aa17.71■□□□□ 0.43
SHKBP1-223ENST00000600552 EPB41L5Q9HCM4 733 aa17.71■□□□□ 0.43
SHKBP1-223ENST00000600552 ASCL3Q9NQ33 180 aa17.71■□□□□ 0.43
SHKBP1-223ENST00000600552 DONSONQ9NYP3 566 aa17.71■□□□□ 0.43
SHKBP1-223ENST00000600552 ATP8A1Q9Y2Q0 1164 aa17.71■□□□□ 0.43
SHKBP1-223ENST00000600552 TEX51A0A1B0GUA7 166 aa17.7■□□□□ 0.42
SHKBP1-223ENST00000600552 LRRC10BA6NIK2 292 aa17.7■□□□□ 0.42
SHKBP1-223ENST00000600552 LRRC53A6NM62 1247 aa17.7■□□□□ 0.42
SHKBP1-223ENST00000600552 PRPSAP2O60256 369 aa17.7■□□□□ 0.42
SHKBP1-223ENST00000600552 RNF8O76064 485 aa17.7■□□□□ 0.42
SHKBP1-223ENST00000600552 TNFSF15O95150 251 aa17.7■□□□□ 0.42
SHKBP1-223ENST00000600552 TNFP01375 233 aa17.7■□□□□ 0.42
SHKBP1-223ENST00000600552 ALPIP09923 528 aa17.7■□□□□ 0.42
SHKBP1-223ENST00000600552 ERCC2P18074 760 aa17.7■□□□□ 0.42
SHKBP1-223ENST00000600552 SERPINA4P29622 427 aa17.7■□□□□ 0.42
SHKBP1-223ENST00000600552 SCNN1BP51168 640 aa17.7■□□□□ 0.42
SHKBP1-223ENST00000600552 SUOXP51687 545 aa17.7■□□□□ 0.42
SHKBP1-223ENST00000600552 TMPRSS3P57727 454 aa17.7■□□□□ 0.42
SHKBP1-223ENST00000600552 ERVPABLB-1P60509 514 aa17.7■□□□□ 0.42
SHKBP1-223ENST00000600552 TYRO3Q06418 890 aa17.7■□□□□ 0.42
SHKBP1-223ENST00000600552 BCL2L1Q07817 233 aa17.7■□□□□ 0.42
SHKBP1-223ENST00000600552 CCDC183Q5T5S1 534 aa17.7■□□□□ 0.42
SHKBP1-223ENST00000600552 BRAT1Q6PJG6 821 aa17.7■□□□□ 0.42
SHKBP1-223ENST00000600552 RFX8Q6ZV50 586 aa17.7■□□□□ 0.42
SHKBP1-223ENST00000600552 APTXQ7Z2E3 356 aaKnown RBP17.7■□□□□ 0.42
SHKBP1-223ENST00000600552 GKN2Q86XP6 184 aa17.7■□□□□ 0.42
SHKBP1-223ENST00000600552 SDR16C5Q8N3Y7 309 aa17.7■□□□□ 0.42
SHKBP1-223ENST00000600552 CCDC74AQ96AQ1 378 aa17.7■□□□□ 0.42
SHKBP1-223ENST00000600552 WDR92Q96MX6 357 aa17.7■□□□□ 0.42
SHKBP1-223ENST00000600552 ZNF641Q96N77 438 aaPredicted RBP17.7■□□□□ 0.42
SHKBP1-223ENST00000600552 TOR1BO14657 336 aa17.69■□□□□ 0.42
SHKBP1-223ENST00000600552 FTLP02792 175 aaPredicted RBP17.69■□□□□ 0.42
SHKBP1-223ENST00000600552 MIPP30301 263 aa17.69■□□□□ 0.42
SHKBP1-223ENST00000600552 MMP12P39900 470 aa17.69■□□□□ 0.42
SHKBP1-223ENST00000600552 PEX5P50542 639 aa17.69■□□□□ 0.42
SHKBP1-223ENST00000600552 CCL7P80098 99 aa17.69■□□□□ 0.42
SHKBP1-223ENST00000600552 ACOX1Q15067 660 aa17.69■□□□□ 0.42
SHKBP1-223ENST00000600552 ANO6Q4KMQ2 910 aa17.69■□□□□ 0.42
SHKBP1-223ENST00000600552 DENND2CQ68D51 928 aa17.69■□□□□ 0.42
SHKBP1-223ENST00000600552 KCTD16Q68DU8 428 aa17.69■□□□□ 0.42
SHKBP1-223ENST00000600552 TAF8Q7Z7C8 310 aa17.69■□□□□ 0.42
SHKBP1-223ENST00000600552 JAMLQ86YT9 394 aa17.69■□□□□ 0.42
SHKBP1-223ENST00000600552 TP53INP2Q8IXH6 220 aa17.69■□□□□ 0.42
SHKBP1-223ENST00000600552 ARFGAP1Q8N6T3 406 aa17.69■□□□□ 0.42
SHKBP1-223ENST00000600552 ARL10Q8N8L6 244 aa17.69■□□□□ 0.42
SHKBP1-223ENST00000600552 ATL2Q8NHH9 583 aa17.69■□□□□ 0.42
SHKBP1-223ENST00000600552 WDR36Q8NI36 951 aaKnown RBP17.69■□□□□ 0.42
SHKBP1-223ENST00000600552 HCAR2Q8TDS4 363 aa17.69■□□□□ 0.42
SHKBP1-223ENST00000600552 PDCD6IPQ8WUM4 868 aaKnown RBP17.69■□□□□ 0.42
SHKBP1-223ENST00000600552 ZNF653Q96CK0 615 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 158.8 ms