RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 PDHA1P08559 390 aa10.81□□□□□ -0.68
SS18-213ENST00000579640 FAM153BP0C7A2 387 aa10.81□□□□□ -0.68
SS18-213ENST00000579640 TSHRP16473 764 aa10.81□□□□□ -0.68
SS18-213ENST00000579640 ITGB7P26010 798 aa10.81□□□□□ -0.68
SS18-213ENST00000579640 MGAT1P26572 445 aa10.81□□□□□ -0.68
SS18-213ENST00000579640 WASP42768 502 aa10.81□□□□□ -0.68
SS18-213ENST00000579640 MAGEA4P43358 317 aa10.81□□□□□ -0.68
SS18-213ENST00000579640 CHRNA4P43681 627 aa10.81□□□□□ -0.68
SS18-213ENST00000579640 SUOXP51687 545 aa10.81□□□□□ -0.68
SS18-213ENST00000579640 ZXDAP98168 799 aa10.81□□□□□ -0.68
SS18-213ENST00000579640 GALNT3Q14435 633 aa10.81□□□□□ -0.68
SS18-213ENST00000579640 UBXN2BQ14CS0 331 aa10.81□□□□□ -0.68
SS18-213ENST00000579640 QPCTQ16769 361 aa10.81□□□□□ -0.68
SS18-213ENST00000579640 FAM153CQ494X1 144 aa10.81□□□□□ -0.68
SS18-213ENST00000579640 MSS51Q4VC12 460 aa10.81□□□□□ -0.68
SS18-213ENST00000579640 PCID2Q5JVF3 399 aa10.81□□□□□ -0.68
SS18-213ENST00000579640 SPDYCQ5MJ68 293 aa10.81□□□□□ -0.68
SS18-213ENST00000579640 TRMT10CQ7L0Y3 403 aaKnown RBP10.81□□□□□ -0.68
SS18-213ENST00000579640 TMC3Q7Z5M5 1100 aa10.81□□□□□ -0.68
SS18-213ENST00000579640 ZBED8Q8IZ13 594 aa10.81□□□□□ -0.68
SS18-213ENST00000579640 RPLP0P6Q8NHW5 317 aa10.81□□□□□ -0.68
SS18-213ENST00000579640 PIP4K2CQ8TBX8 421 aa10.81□□□□□ -0.68
SS18-213ENST00000579640 PYROXD1Q8WU10 500 aa10.81□□□□□ -0.68
SS18-213ENST00000579640 PIH1D2Q8WWB5 315 aa10.81□□□□□ -0.68
SS18-213ENST00000579640 TXLNGYQ9BZA5 131 aa10.81□□□□□ -0.68
SS18-213ENST00000579640 RSPH9Q9H1X1 276 aaPredicted RBP10.81□□□□□ -0.68
SS18-213ENST00000579640 TRABDQ9H4I3 376 aa10.81□□□□□ -0.68
SS18-213ENST00000579640 LMAN1LQ9HAT1 526 aa10.81□□□□□ -0.68
SS18-213ENST00000579640 MRM3Q9HC36 420 aaKnown RBP10.81□□□□□ -0.68
SS18-213ENST00000579640 SAMD15Q9P1V8 674 aa10.81□□□□□ -0.68
SS18-213ENST00000579640 MMP17Q9ULZ9 603 aa10.81□□□□□ -0.68
SS18-213ENST00000579640 TEX264Q9Y6I9 313 aa10.81□□□□□ -0.68
SS18-213ENST00000579640 A0A0J9YYE9 177 aa10.8□□□□□ -0.68
SS18-213ENST00000579640 HEATR9A2RTY3 570 aa10.8□□□□□ -0.68
SS18-213ENST00000579640 TRBC1P01850 177 aa10.8□□□□□ -0.68
SS18-213ENST00000579640 C7P10643 843 aa10.8□□□□□ -0.68
SS18-213ENST00000579640 ADRA1DP25100 572 aa10.8□□□□□ -0.68
SS18-213ENST00000579640 ELK3P41970 407 aa10.8□□□□□ -0.68
SS18-213ENST00000579640 CCDC15Q0P6D6 951 aa10.8□□□□□ -0.68
SS18-213ENST00000579640 MSLNQ13421 630 aaPredicted RBP10.8□□□□□ -0.68
SS18-213ENST00000579640 CERCAMQ5T4B2 595 aa10.8□□□□□ -0.68
SS18-213ENST00000579640 ZNF776Q68DI1 518 aaPredicted RBP10.8□□□□□ -0.68
SS18-213ENST00000579640 USP45Q70EL2 814 aa10.8□□□□□ -0.68
SS18-213ENST00000579640 NLRP9Q7RTR0 991 aa10.8□□□□□ -0.68
SS18-213ENST00000579640 MREGQ8N565 214 aa10.8□□□□□ -0.68
SS18-213ENST00000579640 PPHLN1Q8NEY8 458 aaKnown RBP10.8□□□□□ -0.68
SS18-213ENST00000579640 BRSK1Q8TDC3 778 aa10.8□□□□□ -0.68
SS18-213ENST00000579640 STAMBPL1Q96FJ0 436 aa10.8□□□□□ -0.68
SS18-213ENST00000579640 LYSMD1Q96S90 227 aa10.8□□□□□ -0.68
SS18-213ENST00000579640 EBNA1BP2Q99848 306 aaKnown RBP10.8□□□□□ -0.68
SS18-213ENST00000579640 TBC1D17Q9HA65 648 aa10.8□□□□□ -0.68
SS18-213ENST00000579640 MAGEE1Q9HCI5 957 aa10.8□□□□□ -0.68
SS18-213ENST00000579640 ARFGAP3Q9NP61 516 aa10.8□□□□□ -0.68
SS18-213ENST00000579640 CD320Q9NPF0 282 aa10.8□□□□□ -0.68
SS18-213ENST00000579640 DYRK4Q9NR20 520 aa10.8□□□□□ -0.68
SS18-213ENST00000579640 SYBUQ9NX95 663 aa10.8□□□□□ -0.68
SS18-213ENST00000579640 PRUNE2Q8WUY3 3088 aa10.8□□□□□ -0.68
SS18-213ENST00000579640 A0A1W2PQF6 199 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 FAM170BA6NMN3 283 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 UPK3BL1B0FP48 263 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 UPK3BL2E5RIL1 263 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 KPNA3O00505 521 aaPredicted RBP10.79□□□□□ -0.68
SS18-213ENST00000579640 DYNC1I1O14576 645 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 SPAG6O75602 509 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 CRTAMO95727 393 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 TTC4O95801 387 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 IL1BP01584 269 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 GSTA2P09210 222 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 TPH1P17752 444 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 PGAM1P18669 254 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 XPAP23025 273 aaPredicted RBP10.79□□□□□ -0.68
SS18-213ENST00000579640 PMS2P54278 862 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 PDE1BQ01064 536 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 SATB1Q01826 763 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 ZBTB16Q05516 673 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 SFSWAPQ12872 951 aaKnown RBP10.79□□□□□ -0.68
SS18-213ENST00000579640 POU6F1Q14863 301 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 BEND6Q5SZJ8 279 aaPredicted RBP10.79□□□□□ -0.68
SS18-213ENST00000579640 CASC4Q6P4E1 433 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 MMAAQ8IVH4 418 aaKnown RBP10.79□□□□□ -0.68
SS18-213ENST00000579640 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.79□□□□□ -0.68
SS18-213ENST00000579640 FBXO36Q8NEA4 188 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 PEX13Q92968 403 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 SCRN2Q96FV2 425 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 MCCC1Q96RQ3 725 aaPredicted RBP10.79□□□□□ -0.68
SS18-213ENST00000579640 KIFC1Q9BW19 673 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 CDC42EP4Q9H3Q1 356 aaKnown RBP10.79□□□□□ -0.68
SS18-213ENST00000579640 PIH1D1Q9NWS0 290 aaKnown RBP10.79□□□□□ -0.68
SS18-213ENST00000579640 ZC3H7BQ9UGR2 993 aaKnown RBP10.79□□□□□ -0.68
SS18-213ENST00000579640 RIMKLBQ9ULI2 386 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 SCML1Q9UN30 329 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 SOX13Q9UN79 622 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 CHMP2BQ9UQN3 213 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 TCAF1Q9Y4C2 921 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 MAD1L1Q9Y6D9 718 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 FAM237BA0A1B0GVD1 139 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 CAPN8A6NHC0 703 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 C16orf96A6NNT2 1141 aa10.79□□□□□ -0.68
SS18-213ENST00000579640 PAPSS2O95340 614 aaPredicted RBP10.79□□□□□ -0.68
SS18-213ENST00000579640 CYP2A6P11509 494 aaPredicted RBP10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms