RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 ROPN1Q9HAT0 212 aaPredicted RBP10.31□□□□□ -0.76
SS18-207ENST00000577636 SCUBE2Q9NQ36 999 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 HAUS2Q9NVX0 235 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 OSER1Q9NX31 292 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 TOR4AQ9NXH8 423 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 USP36Q9P275 1121 aaKnown RBP10.31□□□□□ -0.76
SS18-207ENST00000577636 KLHL8Q9P2G9 620 aaPredicted RBP10.31□□□□□ -0.76
SS18-207ENST00000577636 TRHDEQ9UKU6 1024 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 BTBD3Q9Y2F9 522 aa10.31□□□□□ -0.76
SS18-207ENST00000577636 FARP1Q9Y4F1 1045 aaPredicted RBP10.31□□□□□ -0.76
SS18-207ENST00000577636 A0A087WUV0 522 aaPredicted RBP10.3□□□□□ -0.76
SS18-207ENST00000577636 H3BQF6 201 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 GOLGA8MH3BSY2 632 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 DFFAO00273 331 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 FLRT2O43155 660 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 ACSL3O95573 720 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 SYF2O95926 243 aaKnown RBP10.3□□□□□ -0.76
SS18-207ENST00000577636 APRTP07741 180 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 RHOQP17081 205 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 OXTRP30559 389 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 CHKAP35790 457 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 IL9RQ01113 521 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 PPIDQ08752 370 aaKnown RBP10.3□□□□□ -0.76
SS18-207ENST00000577636 ZNF844Q08AG5 666 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 C19orf57Q0VDD7 668 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 SLC10A2Q12908 348 aaPredicted RBP10.3□□□□□ -0.76
SS18-207ENST00000577636 STAT4Q14765 748 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 UAP1Q16222 522 aaPredicted RBP10.3□□□□□ -0.76
SS18-207ENST00000577636 KYNUQ16719 465 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 GEN1Q17RS7 908 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 PARP6Q2NL67 630 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 RABGAP1LQ5R372 815 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 ANKRD20A2Q5SQ80 823 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 ANKRD20A1Q5TYW2 823 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 ANKRD20A3Q5VUR7 823 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 DHRS13Q6UX07 377 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 B4GALNT4Q76KP1 1039 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 CHSY1Q86X52 802 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 PALM2Q8IXS6 379 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 CCDC13Q8IYE1 715 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 ZBED8Q8IZ13 594 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 ATPAF2Q8N5M1 289 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 NAT8LQ8N9F0 302 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 ATP11CQ8NB49 1132 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 CCDC110Q8TBZ0 833 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 NSMCE1Q8WV22 266 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 UCMAQ8WVF2 138 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 SORCS1Q8WY21 1168 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 P2RY11Q96G91 374 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 LGMNQ99538 433 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 CIPCQ9C0C6 399 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 RETREG1Q9H6L5 497 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 VPS37BQ9H9H4 285 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 PPCSQ9HAB8 311 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 XAB2Q9HCS7 855 aaKnown RBP10.3□□□□□ -0.76
SS18-207ENST00000577636 ANLNQ9NQW6 1124 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 MARK1Q9P0L2 795 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 THAP10Q9P2Z0 257 aaPredicted RBP10.3□□□□□ -0.76
SS18-207ENST00000577636 PPARGC1AQ9UBK2 798 aaKnown RBP10.3□□□□□ -0.76
SS18-207ENST00000577636 SNX11Q9Y5W9 270 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 HS3ST4Q9Y661 456 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 ASXL3Q9C0F0 2248 aa10.3□□□□□ -0.76
SS18-207ENST00000577636 URB1O60287 2271 aaKnown RBP10.3□□□□□ -0.76
SS18-207ENST00000577636 DSPP15924 2871 aaKnown RBP10.29□□□□□ -0.76
SS18-207ENST00000577636 PLXND1Q9Y4D7 1925 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 FREM2Q5SZK8 3169 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 TLDC2A0PJX2 215 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 A6NNZ2 444 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 F5H5T6 163 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 AGPSO00116 658 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 AP3B1O00203 1094 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 PLK4O00444 970 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 RASGRF2O14827 1237 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 ALOX15BO15296 676 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 RGS16O15492 202 aaPredicted RBP10.29□□□□□ -0.76
SS18-207ENST00000577636 PSMD3O43242 534 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 SPAG6O75602 509 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 EPHX1P07099 455 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 ABHD2P08910 425 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 ZNF883P0CG24 379 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 TSHRP16473 764 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 TPSB2P20231 275 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 CCNCP24863 283 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 GARSP41250 739 aaKnown RBP10.29□□□□□ -0.76
SS18-207ENST00000577636 ABCG1P45844 678 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 NDST2P52849 883 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 GALNT2Q10471 571 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 AUHQ13825 339 aaKnown RBP10.29□□□□□ -0.76
SS18-207ENST00000577636 ZNF234Q14588 700 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 KCNJ11Q14654 390 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 TEAD4Q15561 434 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 TPSAB1Q15661 275 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 KIF19Q2TAC6 998 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 BBS9Q3SYG4 887 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 TUBB8Q3ZCM7 444 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 CCDC38Q502W7 563 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 MS4A13Q5J8X5 152 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 AGBL2Q5U5Z8 902 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 MANEALQ5VSG8 457 aa10.29□□□□□ -0.76
SS18-207ENST00000577636 LAYNQ6UX15 382 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms