RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 HNRNPA1L2Q32P51 320 aaKnown RBP13.77□□□□□ -0.21
CCDC40-209ENST00000573474 TSTD2Q5T7W7 516 aa13.77□□□□□ -0.21
CCDC40-209ENST00000573474 GDPD4Q6W3E5 623 aa13.77□□□□□ -0.21
CCDC40-209ENST00000573474 RALGPS2Q86X27 583 aaPredicted RBP13.77□□□□□ -0.21
CCDC40-209ENST00000573474 TDRPQ86YL5 185 aa13.77□□□□□ -0.21
CCDC40-209ENST00000573474 SFTPA1Q8IWL2 248 aa13.77□□□□□ -0.21
CCDC40-209ENST00000573474 PAF1Q8N7H5 531 aa13.77□□□□□ -0.21
CCDC40-209ENST00000573474 CHST14Q8NCH0 376 aa13.77□□□□□ -0.21
CCDC40-209ENST00000573474 BLOC1S5Q8TDH9 187 aa13.77□□□□□ -0.21
CCDC40-209ENST00000573474 EPS8L3Q8TE67 593 aaKnown RBP13.77□□□□□ -0.21
CCDC40-209ENST00000573474 PIH1D2Q8WWB5 315 aa13.77□□□□□ -0.21
CCDC40-209ENST00000573474 PTPRN2Q92932 1015 aa13.77□□□□□ -0.21
CCDC40-209ENST00000573474 MFSD3Q96ES6 412 aa13.77□□□□□ -0.21
CCDC40-209ENST00000573474 LRIG1Q96JA1 1093 aa13.77□□□□□ -0.21
CCDC40-209ENST00000573474 SRPK1Q96SB4 655 aaKnown RBP13.77□□□□□ -0.21
CCDC40-209ENST00000573474 ZDHHC6Q9H6R6 413 aa13.77□□□□□ -0.21
CCDC40-209ENST00000573474 HACD3Q9P035 362 aa13.77□□□□□ -0.21
CCDC40-209ENST00000573474 VPS18Q9P253 973 aa13.77□□□□□ -0.21
CCDC40-209ENST00000573474 RIMKLBQ9ULI2 386 aa13.77□□□□□ -0.21
CCDC40-209ENST00000573474 STARD13Q9Y3M8 1113 aa13.77□□□□□ -0.21
CCDC40-209ENST00000573474 SMIM23A6NLE4 172 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 POC1B-GALNT4F8VUJ3 575 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 NPC1O15118 1278 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 CDH16O75309 829 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 CRTAMO95727 393 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 C1QAP02745 245 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 HNRNPLP14866 589 aaKnown RBP eCLIP13.76□□□□□ -0.21
CCDC40-209ENST00000573474 GLULP15104 373 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 PAMP19021 973 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 SLC8A1P32418 973 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 CTHP32929 405 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 MSH2P43246 934 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 SLCO1A2P46721 670 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 PFKPQ01813 784 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 MGAT5Q09328 741 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 NAB1Q13506 487 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 RASA2Q15283 850 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 TAF1AQ15573 450 aaPredicted RBP13.76□□□□□ -0.21
CCDC40-209ENST00000573474 KBTBD12Q3ZCT8 623 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 AGBL2Q5U5Z8 902 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 ESRP1Q6NXG1 681 aaKnown RBP13.76□□□□□ -0.21
CCDC40-209ENST00000573474 TRMT10BQ6PF06 316 aaKnown RBP13.76□□□□□ -0.21
CCDC40-209ENST00000573474 NDUFAF2Q8N183 169 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 RIBC1Q8N443 379 aaPredicted RBP13.76□□□□□ -0.21
CCDC40-209ENST00000573474 SPOCK2Q92563 424 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 CDKL2Q92772 493 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 PEX13Q92968 403 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 VOPP1Q96AW1 172 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 ECHDC3Q96DC8 303 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 PGM2Q96G03 612 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 CERS2Q96G23 380 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 OSBPL1AQ9BXW6 950 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 TMEM245Q9H330 911 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 CENPHQ9H3R5 247 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 TRABDQ9H4I3 376 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 FBRSL1Q9HCM7 1045 aaKnown RBP13.76□□□□□ -0.21
CCDC40-209ENST00000573474 PPANQ9NQ55 473 aaKnown RBP13.76□□□□□ -0.21
CCDC40-209ENST00000573474 TREX1Q9NSU2 369 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.76□□□□□ -0.21
CCDC40-209ENST00000573474 SUN2Q9UH99 717 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 IL36AQ9UHA7 158 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 PHTF1Q9UMS5 762 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 KIAA1549LQ6ZVL6 1849 aa13.76□□□□□ -0.21
CCDC40-209ENST00000573474 C2orf81A6NN90 581 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 RGS16O15492 202 aaPredicted RBP13.75□□□□□ -0.21
CCDC40-209ENST00000573474 LDB2O43679 373 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 UGT2B4P06133 528 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 ASGR2P07307 311 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 PIRTP0C851 137 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 GCAP28676 217 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 ABL2P42684 1182 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 POLR2LP62875 67 aaKnown RBP13.75□□□□□ -0.21
CCDC40-209ENST00000573474 PDE1BQ01064 536 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 EFTUD2Q15029 972 aaKnown RBP eCLIP13.75□□□□□ -0.21
CCDC40-209ENST00000573474 SKIDA1Q1XH10 827 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 ARSIQ5FYB1 569 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 C9orf64Q5T6V5 341 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 PDPK2PQ6A1A2 396 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 KIAA0930Q6ICG6 404 aaPredicted RBP13.75□□□□□ -0.21
CCDC40-209ENST00000573474 SERPINA13PQ6UXR4 307 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 LRRC6Q86X45 466 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 CTAGE3PQ8IX95 158 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 UNC5BQ8IZJ1 945 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 PPM1NQ8N819 430 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 HCAR2Q8TDS4 363 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 STYXQ8WUJ0 223 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 SLC44A1Q8WWI5 657 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 ARL8AQ96BM9 186 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 ZNF778Q96MU6 729 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 PAFAH2Q99487 392 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 DHRS4Q9BTZ2 278 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 STMN4Q9H169 189 aaPredicted RBP13.75□□□□□ -0.21
CCDC40-209ENST00000573474 MTG2Q9H4K7 406 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 MAGEE1Q9HCI5 957 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 SMYD2Q9NRG4 433 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 C20orf96Q9NUD7 363 aaPredicted RBP13.75□□□□□ -0.21
CCDC40-209ENST00000573474 BCCIPQ9P287 314 aaKnown RBP eCLIP13.75□□□□□ -0.21
CCDC40-209ENST00000573474 PSMC3IPQ9P2W1 217 aaPredicted RBP13.75□□□□□ -0.21
CCDC40-209ENST00000573474 SLC2A6Q9UGQ3 507 aa13.75□□□□□ -0.21
CCDC40-209ENST00000573474 LGALS13Q9UHV8 139 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms