RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 MAP3K13O43283 966 aa20.77■□□□□ 0.92
VPS53-210ENST00000571456 NDUFS2O75306 463 aa20.77■□□□□ 0.92
VPS53-210ENST00000571456 RNASEH2AO75792 299 aaKnown RBP20.77■□□□□ 0.92
VPS53-210ENST00000571456 HLA-DQB2P05538 268 aa20.77■□□□□ 0.92
VPS53-210ENST00000571456 UGT2B4P06133 528 aa20.77■□□□□ 0.92
VPS53-210ENST00000571456 PTPN3P26045 913 aa20.77■□□□□ 0.92
VPS53-210ENST00000571456 CXCR5P32302 372 aa20.77■□□□□ 0.92
VPS53-210ENST00000571456 ITKQ08881 620 aa20.77■□□□□ 0.92
VPS53-210ENST00000571456 NDUFAF2Q8N183 169 aa20.77■□□□□ 0.92
VPS53-210ENST00000571456 PGBD5Q8N414 524 aa20.77■□□□□ 0.92
VPS53-210ENST00000571456 CHCHD4Q8N4Q1 142 aa20.77■□□□□ 0.92
VPS53-210ENST00000571456 FOXJ1Q92949 421 aa20.77■□□□□ 0.92
VPS53-210ENST00000571456 WDR24Q96S15 920 aa20.77■□□□□ 0.92
VPS53-210ENST00000571456 SEMA3CQ99985 751 aa20.77■□□□□ 0.92
VPS53-210ENST00000571456 SLC25A51Q9H1U9 297 aa20.77■□□□□ 0.92
VPS53-210ENST00000571456 SLC6A17Q9H1V8 727 aa20.77■□□□□ 0.92
VPS53-210ENST00000571456 SEPT10Q9P0V9 454 aa20.77■□□□□ 0.92
VPS53-210ENST00000571456 CYP8B1Q9UNU6 501 aa20.77■□□□□ 0.92
VPS53-210ENST00000571456 INVSQ9Y283 1065 aa20.77■□□□□ 0.92
VPS53-210ENST00000571456 CEP192Q8TEP8 1941 aa20.76■□□□□ 0.91
VPS53-210ENST00000571456 GOLGA6L10A0A0M3HER8 536 aa20.76■□□□□ 0.91
VPS53-210ENST00000571456 A0A1W2PP55 124 aa20.76■□□□□ 0.91
VPS53-210ENST00000571456 RNF103O00237 685 aa20.76■□□□□ 0.91
VPS53-210ENST00000571456 AP1G1O43747 822 aa20.76■□□□□ 0.91
VPS53-210ENST00000571456 OPHN1O60890 802 aa20.76■□□□□ 0.91
VPS53-210ENST00000571456 RBL1P28749 1068 aa20.76■□□□□ 0.91
VPS53-210ENST00000571456 DRD3P35462 400 aa20.76■□□□□ 0.91
VPS53-210ENST00000571456 NUDT1P36639 197 aa20.76■□□□□ 0.91
VPS53-210ENST00000571456 RGRP47804 291 aa20.76■□□□□ 0.91
VPS53-210ENST00000571456 RPL26P61254 145 aaKnown RBP20.76■□□□□ 0.91
VPS53-210ENST00000571456 WASHC5Q12768 1159 aa20.76■□□□□ 0.91
VPS53-210ENST00000571456 ZBTB17Q13105 803 aa20.76■□□□□ 0.91
VPS53-210ENST00000571456 FBXL19Q6PCT2 694 aa20.76■□□□□ 0.91
VPS53-210ENST00000571456 PIP4P1Q86T03 277 aa20.76■□□□□ 0.91
VPS53-210ENST00000571456 AADATQ8N5Z0 425 aa20.76■□□□□ 0.91
VPS53-210ENST00000571456 CNTD1Q8N815 330 aa20.76■□□□□ 0.91
VPS53-210ENST00000571456 OR6K2Q8NGY2 324 aa20.76■□□□□ 0.91
VPS53-210ENST00000571456 ECHDC3Q96DC8 303 aa20.76■□□□□ 0.91
VPS53-210ENST00000571456 KLHL32Q96NJ5 620 aa20.76■□□□□ 0.91
VPS53-210ENST00000571456 PREBQ9HCU5 417 aa20.76■□□□□ 0.91
VPS53-210ENST00000571456 KLHL8Q9P2G9 620 aaPredicted RBP20.76■□□□□ 0.91
VPS53-210ENST00000571456 RPL26L1Q9UNX3 145 aaKnown RBP20.76■□□□□ 0.91
VPS53-210ENST00000571456 DRG1Q9Y295 367 aaKnown RBP20.76■□□□□ 0.91
VPS53-210ENST00000571456 C5orf60A6NFR6 353 aa20.75■□□□□ 0.91
VPS53-210ENST00000571456 C16orf96A6NNT2 1141 aa20.75■□□□□ 0.91
VPS53-210ENST00000571456 KCNN4O15554 427 aa20.75■□□□□ 0.91
VPS53-210ENST00000571456 HTRA2O43464 458 aaPredicted RBP20.75■□□□□ 0.91
VPS53-210ENST00000571456 PLRG1O43660 514 aaKnown RBP20.75■□□□□ 0.91
VPS53-210ENST00000571456 LIASO43766 372 aa20.75■□□□□ 0.91
VPS53-210ENST00000571456 ITGAVP06756 1048 aa20.75■□□□□ 0.91
VPS53-210ENST00000571456 ACTN2P35609 894 aa20.75■□□□□ 0.91
VPS53-210ENST00000571456 ELP6Q0PNE2 266 aa20.75■□□□□ 0.91
VPS53-210ENST00000571456 CNTN1Q12860 1018 aa20.75■□□□□ 0.91
VPS53-210ENST00000571456 AGBL4Q5VU57 503 aa20.75■□□□□ 0.91
VPS53-210ENST00000571456 C4orf22Q6V702 233 aa20.75■□□□□ 0.91
VPS53-210ENST00000571456 NYAP1Q6ZVC0 841 aa20.75■□□□□ 0.91
VPS53-210ENST00000571456 LPCAT2Q7L5N7 544 aa20.75■□□□□ 0.91
VPS53-210ENST00000571456 CACUL1Q86Y37 369 aa20.75■□□□□ 0.91
VPS53-210ENST00000571456 OR2T34Q8NGX1 318 aa20.75■□□□□ 0.91
VPS53-210ENST00000571456 PIGKQ92643 395 aa20.75■□□□□ 0.91
VPS53-210ENST00000571456 LRRC45Q96CN5 670 aa20.75■□□□□ 0.91
VPS53-210ENST00000571456 RTP4Q96DX8 246 aa20.75■□□□□ 0.91
VPS53-210ENST00000571456 ERLEC1Q96DZ1 483 aa20.75■□□□□ 0.91
VPS53-210ENST00000571456 IMP4Q96G21 291 aaKnown RBP20.75■□□□□ 0.91
VPS53-210ENST00000571456 TOE1Q96GM8 510 aaKnown RBP20.75■□□□□ 0.91
VPS53-210ENST00000571456 ZNF419Q96HQ0 510 aaPredicted RBP20.75■□□□□ 0.91
VPS53-210ENST00000571456 NEUROG2Q9H2A3 272 aa20.75■□□□□ 0.91
VPS53-210ENST00000571456 USP29Q9HBJ7 922 aa20.75■□□□□ 0.91
VPS53-210ENST00000571456 NOD2Q9HC29 1040 aa20.75■□□□□ 0.91
VPS53-210ENST00000571456 GLOD4Q9HC38 313 aa20.75■□□□□ 0.91
VPS53-210ENST00000571456 TTLL3Q9Y4R7 772 aa20.75■□□□□ 0.91
VPS53-210ENST00000571456 ADAMTS9Q9P2N4 1935 aa20.74■□□□□ 0.91
VPS53-210ENST00000571456 TNRC6BQ9UPQ9 1833 aaKnown RBP20.74■□□□□ 0.91
VPS53-210ENST00000571456 TCRBV7S2A1N4TA0A589 114 aa20.74■□□□□ 0.91
VPS53-210ENST00000571456 UPK3BL1B0FP48 263 aa20.74■□□□□ 0.91
VPS53-210ENST00000571456 UPK3BL2E5RIL1 263 aa20.74■□□□□ 0.91
VPS53-210ENST00000571456 TRAFD1O14545 582 aaPredicted RBP20.74■□□□□ 0.91
VPS53-210ENST00000571456 SEMA4FO95754 770 aa20.74■□□□□ 0.91
VPS53-210ENST00000571456 ADRB3P13945 408 aa20.74■□□□□ 0.91
VPS53-210ENST00000571456 XPAP23025 273 aaPredicted RBP20.74■□□□□ 0.91
VPS53-210ENST00000571456 CASQ1P31415 396 aa20.74■□□□□ 0.91
VPS53-210ENST00000571456 DHPSP49366 369 aaPredicted RBP20.74■□□□□ 0.91
VPS53-210ENST00000571456 MAXP61244 160 aa20.74■□□□□ 0.91
VPS53-210ENST00000571456 SIX1Q15475 284 aaPredicted RBP20.74■□□□□ 0.91
VPS53-210ENST00000571456 OASLQ15646 514 aaKnown RBP20.74■□□□□ 0.91
VPS53-210ENST00000571456 TRIM61Q5EBN2 209 aa20.74■□□□□ 0.91
VPS53-210ENST00000571456 PIP5KL1Q5T9C9 394 aa20.74■□□□□ 0.91
VPS53-210ENST00000571456 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP20.74■□□□□ 0.91
VPS53-210ENST00000571456 PID1Q7Z2X4 250 aa20.74■□□□□ 0.91
VPS53-210ENST00000571456 PAF1Q8N7H5 531 aa20.74■□□□□ 0.91
VPS53-210ENST00000571456 ARRDC2Q8TBH0 407 aa20.74■□□□□ 0.91
VPS53-210ENST00000571456 RLN3Q8WXF3 142 aa20.74■□□□□ 0.91
VPS53-210ENST00000571456 VOPP1Q96AW1 172 aa20.74■□□□□ 0.91
VPS53-210ENST00000571456 ARRDC3Q96B67 414 aa20.74■□□□□ 0.91
VPS53-210ENST00000571456 SPATA13Q96N96 652 aa20.74■□□□□ 0.91
VPS53-210ENST00000571456 AGAP3Q96P47 875 aa20.74■□□□□ 0.91
VPS53-210ENST00000571456 FCRL5Q96RD9 977 aa20.74■□□□□ 0.91
VPS53-210ENST00000571456 NUSAP1Q9BXS6 441 aaKnown RBP20.74■□□□□ 0.91
VPS53-210ENST00000571456 FEZ2Q9UHY8 353 aaPredicted RBP20.74■□□□□ 0.91
VPS53-210ENST00000571456 DNPEPQ9ULA0 475 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms