RNA–Protein interactions for RNA: ENST00000569243.5

UBR1-209, Transcript of ubiquitin protein ligase E3 component n-recognin 1, human

TSL 3

Gene UBR1, Length 702 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR1-209	ENST00000569243	KDM4B	O94953	1096 aa		3.38	□□□□□ -1.87
UBR1-209	ENST00000569243	TBX6	O95947	436 aa	Predicted RBP	3.38	□□□□□ -1.87
UBR1-209	ENST00000569243	LDLR	P01130	860 aa		3.38	□□□□□ -1.87
UBR1-209	ENST00000569243	ATP1A1	P05023	1023 aa	Known RBP	3.38	□□□□□ -1.87
UBR1-209	ENST00000569243	CFC1B	P0CG36	223 aa		3.38	□□□□□ -1.87
UBR1-209	ENST00000569243	CFC1	P0CG37	223 aa		3.38	□□□□□ -1.87
UBR1-209	ENST00000569243	TFPI	P10646	304 aa		3.38	□□□□□ -1.87
UBR1-209	ENST00000569243	ZNF8	P17098	575 aa	Predicted RBP	3.38	□□□□□ -1.87
UBR1-209	ENST00000569243	PTPN2	P17706	415 aa		3.38	□□□□□ -1.87
UBR1-209	ENST00000569243	NLRP5	P59047	1200 aa		3.38	□□□□□ -1.87
UBR1-209	ENST00000569243	ACTR2	P61160	394 aa		3.38	□□□□□ -1.87
UBR1-209	ENST00000569243	PRKG1	Q13976	671 aa		3.38	□□□□□ -1.87
UBR1-209	ENST00000569243	SLC18A3	Q16572	532 aa		3.38	□□□□□ -1.87
UBR1-209	ENST00000569243	TUBB8	Q3ZCM7	444 aa		3.38	□□□□□ -1.87
UBR1-209	ENST00000569243	CTXN3	Q4LDR2	81 aa		3.38	□□□□□ -1.87
UBR1-209	ENST00000569243	ATP13A5	Q4VNC0	1218 aa		3.38	□□□□□ -1.87
UBR1-209	ENST00000569243	SH2D4B	Q5SQS7	431 aa		3.38	□□□□□ -1.87
UBR1-209	ENST00000569243	C19orf48	Q6RUI8	117 aa		3.38	□□□□□ -1.87
UBR1-209	ENST00000569243	NOL8	Q76FK4	1167 aa	Known RBP	3.38	□□□□□ -1.87
UBR1-209	ENST00000569243	ZNF441	Q8N8Z8	693 aa		3.38	□□□□□ -1.87
UBR1-209	ENST00000569243	USP38	Q8NB14	1042 aa		3.38	□□□□□ -1.87
UBR1-209	ENST00000569243	DNAAF1	Q8NEP3	725 aa		3.38	□□□□□ -1.87
UBR1-209	ENST00000569243	GOLGA1	Q92805	767 aa		3.38	□□□□□ -1.87
UBR1-209	ENST00000569243	PAGR1	Q9BTK6	254 aa		3.38	□□□□□ -1.87
UBR1-209	ENST00000569243	CTDSP1	Q9GZU7	261 aa		3.38	□□□□□ -1.87
UBR1-209	ENST00000569243	PCDH9	Q9HC56	1237 aa		3.38	□□□□□ -1.87
UBR1-209	ENST00000569243	FBRSL1	Q9HCM7	1045 aa	Known RBP	3.38	□□□□□ -1.87
UBR1-209	ENST00000569243	CYSLTR2	Q9NS75	346 aa		3.38	□□□□□ -1.87
UBR1-209	ENST00000569243	KIF17	Q9P2E2	1029 aa		3.38	□□□□□ -1.87
UBR1-209	ENST00000569243	DERA	Q9Y315	318 aa		3.38	□□□□□ -1.87
UBR1-209	ENST00000569243	LILRA5	A6NI73	299 aa		3.37	□□□□□ -1.87
UBR1-209	ENST00000569243	ZNF587B	E7ETH6	402 aa		3.37	□□□□□ -1.87
UBR1-209	ENST00000569243	DHX16	O60231	1041 aa	Known RBP	3.37	□□□□□ -1.87
UBR1-209	ENST00000569243	KRT38	O76015	456 aa		3.37	□□□□□ -1.87
UBR1-209	ENST00000569243	CETP	P11597	493 aa		3.37	□□□□□ -1.87
UBR1-209	ENST00000569243	SRD5A1	P18405	259 aa		3.37	□□□□□ -1.87
UBR1-209	ENST00000569243	CD53	P19397	219 aa		3.37	□□□□□ -1.87
UBR1-209	ENST00000569243	HNRNPH1	P31943	449 aa	Known RBP	3.37	□□□□□ -1.87
UBR1-209	ENST00000569243	TIMP3	P35625	211 aa		3.37	□□□□□ -1.87
UBR1-209	ENST00000569243	GRK6	P43250	576 aa		3.37	□□□□□ -1.87
UBR1-209	ENST00000569243	NOV	P48745	357 aa		3.37	□□□□□ -1.87
UBR1-209	ENST00000569243	RAD23B	P54727	409 aa		3.37	□□□□□ -1.87
UBR1-209	ENST00000569243	ERVK11-1	P61568	191 aa		3.37	□□□□□ -1.87
UBR1-209	ENST00000569243	CUL4B	Q13620	913 aa		3.37	□□□□□ -1.87
UBR1-209	ENST00000569243	FAM83B	Q5T0W9	1011 aa		3.37	□□□□□ -1.87
UBR1-209	ENST00000569243	PLA2G4F	Q68DD2	849 aa		3.37	□□□□□ -1.87
UBR1-209	ENST00000569243	KLHDC8B	Q8IXV7	354 aa		3.37	□□□□□ -1.87
UBR1-209	ENST00000569243	TMEM57	Q8N5G2	664 aa		3.37	□□□□□ -1.87
UBR1-209	ENST00000569243	METTL27	Q8N6F8	245 aa	Predicted RBP	3.37	□□□□□ -1.87
UBR1-209	ENST00000569243	IL17RC	Q8NAC3	791 aa		3.37	□□□□□ -1.87
UBR1-209	ENST00000569243	ARRDC2	Q8TBH0	407 aa		3.37	□□□□□ -1.87
UBR1-209	ENST00000569243	CREB3L4	Q8TEY5	395 aa		3.37	□□□□□ -1.87
UBR1-209	ENST00000569243	RNFT2	Q96EX2	444 aa		3.37	□□□□□ -1.87
UBR1-209	ENST00000569243	C3orf30	Q96M34	536 aa		3.37	□□□□□ -1.87
UBR1-209	ENST00000569243	MPHOSPH6	Q99547	160 aa	Known RBP	3.37	□□□□□ -1.87
UBR1-209	ENST00000569243	ZFP57	Q9NU63	452 aa		3.37	□□□□□ -1.87
UBR1-209	ENST00000569243	SUFU	Q9UMX1	484 aa		3.37	□□□□□ -1.87
UBR1-209	ENST00000569243	NFE2L3	Q9Y4A8	694 aa		3.37	□□□□□ -1.87
UBR1-209	ENST00000569243	ADGRF5	Q8IZF2	1346 aa		3.37	□□□□□ -1.87
UBR1-209	ENST00000569243	C17orf113	A0A1B0GUU1	675 aa		3.36	□□□□□ -1.87
UBR1-209	ENST00000569243	MID1	O15344	667 aa		3.36	□□□□□ -1.87
UBR1-209	ENST00000569243	ZIC3	O60481	467 aa		3.36	□□□□□ -1.87
UBR1-209	ENST00000569243	PCNA	P12004	261 aa		3.36	□□□□□ -1.87
UBR1-209	ENST00000569243	KCNA5	P22460	613 aa		3.36	□□□□□ -1.87
UBR1-209	ENST00000569243	STX2	P32856	288 aa		3.36	□□□□□ -1.87
UBR1-209	ENST00000569243	BRWD1-AS2	P59051	145 aa		3.36	□□□□□ -1.87
UBR1-209	ENST00000569243	PMP22	Q01453	160 aa		3.36	□□□□□ -1.87
UBR1-209	ENST00000569243	TRIM14	Q14142	442 aa		3.36	□□□□□ -1.87
UBR1-209	ENST00000569243	TIGD6	Q17RP2	521 aa		3.36	□□□□□ -1.87
UBR1-209	ENST00000569243	ADCK5	Q3MIX3	580 aa		3.36	□□□□□ -1.87
UBR1-209	ENST00000569243	NAPEPLD	Q6IQ20	393 aa		3.36	□□□□□ -1.87
UBR1-209	ENST00000569243	CCDC174	Q6PII3	467 aa		3.36	□□□□□ -1.87
UBR1-209	ENST00000569243	CCNI2	Q6ZMN8	369 aa	Predicted RBP	3.36	□□□□□ -1.87
UBR1-209	ENST00000569243	KRBA2	Q6ZNG9	492 aa		3.36	□□□□□ -1.87
UBR1-209	ENST00000569243	SATL1	Q86VE3	508 aa		3.36	□□□□□ -1.87
UBR1-209	ENST00000569243	CHD1L	Q86WJ1	897 aa		3.36	□□□□□ -1.87
UBR1-209	ENST00000569243	VPS37A	Q8NEZ2	397 aa		3.36	□□□□□ -1.87
UBR1-209	ENST00000569243	LINS1	Q8NG48	757 aa		3.36	□□□□□ -1.87
UBR1-209	ENST00000569243	LRRC8C	Q8TDW0	803 aa		3.36	□□□□□ -1.87
UBR1-209	ENST00000569243	CSGALNACT1	Q8TDX6	532 aa		3.36	□□□□□ -1.87
UBR1-209	ENST00000569243	PPM1E	Q8WY54	764 aa		3.36	□□□□□ -1.87
UBR1-209	ENST00000569243	RUBCN	Q92622	972 aa		3.36	□□□□□ -1.87
UBR1-209	ENST00000569243	TMEM19	Q96HH6	336 aa		3.36	□□□□□ -1.87
UBR1-209	ENST00000569243	TTC14	Q96N46	770 aa		3.36	□□□□□ -1.87
UBR1-209	ENST00000569243	TRMT61B	Q9BVS5	477 aa	Known RBP	3.36	□□□□□ -1.87
UBR1-209	ENST00000569243	RBM4	Q9BWF3	364 aa	Known RBP	3.36	□□□□□ -1.87
UBR1-209	ENST00000569243	EGLN1	Q9GZT9	426 aa		3.36	□□□□□ -1.87
UBR1-209	ENST00000569243	KLHL1	Q9NR64	748 aa		3.36	□□□□□ -1.87
UBR1-209	ENST00000569243	MCM9	Q9NXL9	1143 aa		3.36	□□□□□ -1.87
UBR1-209	ENST00000569243	SLC9A2	Q9UBY0	812 aa		3.36	□□□□□ -1.87
UBR1-209	ENST00000569243		A0A0G2JPF8	293 aa		3.35	□□□□□ -1.87
UBR1-209	ENST00000569243		A0A0U1RQF3	1178 aa		3.35	□□□□□ -1.87
UBR1-209	ENST00000569243	ARHGAP10	A1A4S6	786 aa		3.35	□□□□□ -1.87
UBR1-209	ENST00000569243	GOLGA6L9	A6NEM1	432 aa		3.35	□□□□□ -1.87
UBR1-209	ENST00000569243	CBY3	A6NI87	242 aa		3.35	□□□□□ -1.87
UBR1-209	ENST00000569243	HNRNPCL3	B7ZW38	293 aa		3.35	□□□□□ -1.87
UBR1-209	ENST00000569243	AKR1B15	C9JRZ8	316 aa	Predicted RBP	3.35	□□□□□ -1.87
UBR1-209	ENST00000569243	C16orf97	H3BN30	126 aa		3.35	□□□□□ -1.87
UBR1-209	ENST00000569243	IRAK2	O43187	625 aa		3.35	□□□□□ -1.87
UBR1-209	ENST00000569243	SLC25A17	O43808	307 aa		3.35	□□□□□ -1.87

Retrieved 100 of 20,778 RNA–protein pairs in 134.7 ms