RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 NMRK1Q9NWW6 199 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 DDX43Q9NXZ2 648 aaKnown RBP3.32□□□□□ -1.88
VPS35-208ENST00000568612 STMN3Q9NZ72 180 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 NUP50Q9UKX7 468 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 BAG5Q9UL15 447 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 CLEC4AQ9UMR7 237 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 GTF2A1LQ9UNN4 478 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 AGTPBP1Q9UPW5 1226 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 POLHQ9Y253 713 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 MED16Q9Y2X0 877 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 STON1Q9Y6Q2 735 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 TNKSO95271 1327 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 MAP3K15Q6ZN16 1313 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 PCDH11XQ9BZA7 1347 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 PCDH11YQ9BZA8 1340 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 SYNJ2O15056 1496 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 MRC2Q9UBG0 1479 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 NESP48681 1621 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 IFT172Q9UG01 1749 aa3.32□□□□□ -1.88
VPS35-208ENST00000568612 ZNFX1Q9P2E3 1918 aaKnown RBP3.31□□□□□ -1.88
VPS35-208ENST00000568612 IQGAP1P46940 1657 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 NEO1Q92859 1461 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 PTPRTO14522 1441 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 FGD6Q6ZV73 1430 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 RIMS2Q9UQ26 1411 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 ARHGEF37A1IGU5 675 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 HEATR9A2RTY3 570 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 OR5K3A6NET4 321 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 SLC9B1P1A6NJY1 282 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 TMEM200CA6NKL6 621 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 TARM1B6A8C7 271 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 FZD9O00144 591 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 PSMD9O00233 223 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 CACNB4O00305 520 aaPredicted RBP3.31□□□□□ -1.88
VPS35-208ENST00000568612 GRM6O15303 877 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 FOXN1O15353 648 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 GATCO43716 136 aaKnown RBP3.31□□□□□ -1.88
VPS35-208ENST00000568612 NIPSNAP2O75323 286 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 BCAR3O75815 825 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 SLITRK3O94933 977 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 PRSS23O95084 383 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 CCNDBP1O95273 360 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 BMP10O95393 424 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 GAS8O95995 478 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 CFIP05156 583 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 RPLP2P05387 115 aaKnown RBP3.31□□□□□ -1.88
VPS35-208ENST00000568612 LYNP07948 512 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 CYP3A4P08684 503 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 CKBP12277 381 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 POU2F1P14859 743 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 PDGFRAP16234 1089 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 ALOX12P18054 663 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 CYP3A5P20815 502 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 DRD4P21917 467 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 FGFR4P22455 802 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 JAK1P23458 1154 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 CXCR2P25025 360 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 IDUAP35475 653 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 IGHMBP2P38935 993 aaKnown RBP3.31□□□□□ -1.88
VPS35-208ENST00000568612 GARSP41250 739 aaKnown RBP3.31□□□□□ -1.88
VPS35-208ENST00000568612 IFNAR2P48551 515 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 CLCN4P51793 760 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 VCPP55072 806 aaKnown RBP3.31□□□□□ -1.88
VPS35-208ENST00000568612 NLRP11P59045 1033 aaKnown RBP3.31□□□□□ -1.88
VPS35-208ENST00000568612 ZNF280AP59817 542 aaPredicted RBP3.31□□□□□ -1.88
VPS35-208ENST00000568612 CTXN1P60606 82 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 KCNJ2P63252 427 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 CSNK2BP67870 215 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 CDC42EP1Q00587 391 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 OTUD4Q01804 1114 aaKnown RBP3.31□□□□□ -1.88
VPS35-208ENST00000568612 RHAGQ02094 409 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 RNASELQ05823 741 aaKnown RBP3.31□□□□□ -1.88
VPS35-208ENST00000568612 GFPT1Q06210 699 aaPredicted RBP3.31□□□□□ -1.88
VPS35-208ENST00000568612 CKAP4Q07065 602 aaKnown RBP3.31□□□□□ -1.88
VPS35-208ENST00000568612 LGALS3BPQ08380 585 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 COASYQ13057 564 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 MORC3Q14149 939 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 PLS1Q14651 629 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 ODF1Q14990 250 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 TGFBIQ15582 683 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 KCNJ8Q15842 424 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 TXNRD1Q16881 649 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 GEN1Q17RS7 908 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 PARP6Q2NL67 630 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 AARDQ4LEZ3 155 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 KRBOX4Q5JUW0 171 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 WASHC2DQ5SRD0 308 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 FAM83BQ5T0W9 1011 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 HECTD2Q5U5R9 776 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 HAUS3Q68CZ6 603 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 EMBQ6PCB8 327 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 SLC4A10Q6U841 1118 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 PEX26Q7Z412 305 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 SLFN11Q7Z7L1 901 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 GLRX5Q86SX6 157 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 TBC1D1Q86TI0 1168 aaPredicted RBP3.31□□□□□ -1.88
VPS35-208ENST00000568612 ADCK1Q86TW2 530 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 ZBTB46Q86UZ6 589 aa3.31□□□□□ -1.88
VPS35-208ENST00000568612 RALGPS2Q86X27 583 aaPredicted RBP3.31□□□□□ -1.88
VPS35-208ENST00000568612 GALNT13Q8IUC8 556 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms