RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 ZNF248Q8NDW4 579 aa16.21■□□□□ 0.19
CLN3-229ENST00000567963 FNIP1Q8TF40 1166 aa16.21■□□□□ 0.19
CLN3-229ENST00000567963 GRAMD1AQ96CP6 724 aa16.21■□□□□ 0.19
CLN3-229ENST00000567963 HIC2Q96JB3 615 aa16.21■□□□□ 0.19
CLN3-229ENST00000567963 UBL7Q96S82 380 aaPredicted RBP16.21■□□□□ 0.19
CLN3-229ENST00000567963 KCTD15Q96SI1 283 aaPredicted RBP16.21■□□□□ 0.19
CLN3-229ENST00000567963 TMEM63CQ9P1W3 806 aa16.21■□□□□ 0.19
CLN3-229ENST00000567963 FASNP49327 2511 aaKnown RBP16.21■□□□□ 0.18
CLN3-229ENST00000567963 RP1P56715 2156 aa16.2■□□□□ 0.18
CLN3-229ENST00000567963 EIF4E1BA6NMX2 242 aaKnown RBP16.2■□□□□ 0.18
CLN3-229ENST00000567963 MIPP30301 263 aa16.2■□□□□ 0.18
CLN3-229ENST00000567963 MMP12P39900 470 aa16.2■□□□□ 0.18
CLN3-229ENST00000567963 HK3P52790 923 aa16.2■□□□□ 0.18
CLN3-229ENST00000567963 PCBP4P57723 403 aaKnown RBP16.2■□□□□ 0.18
CLN3-229ENST00000567963 ERVPABLB-1P60509 514 aa16.2■□□□□ 0.18
CLN3-229ENST00000567963 NSUN2Q08J23 767 aaKnown RBP eCLIP16.2■□□□□ 0.18
CLN3-229ENST00000567963 ASIC2Q16515 512 aa16.2■□□□□ 0.18
CLN3-229ENST00000567963 CFAP58Q5T655 872 aa16.2■□□□□ 0.18
CLN3-229ENST00000567963 PSTKQ8IV42 348 aaKnown RBP16.2■□□□□ 0.18
CLN3-229ENST00000567963 ARHGAP12Q8IWW6 846 aa16.2■□□□□ 0.18
CLN3-229ENST00000567963 TSACCQ96A04 125 aaPredicted RBP16.2■□□□□ 0.18
CLN3-229ENST00000567963 FCRL3Q96P31 734 aaPredicted RBP16.2■□□□□ 0.18
CLN3-229ENST00000567963 APOOQ9BUR5 198 aa16.2■□□□□ 0.18
CLN3-229ENST00000567963 TRIM7Q9C029 511 aa16.2■□□□□ 0.18
CLN3-229ENST00000567963 ATP13A3Q9H7F0 1226 aa16.2■□□□□ 0.18
CLN3-229ENST00000567963 ANKRD36A6QL64 1941 aa16.19■□□□□ 0.18
CLN3-229ENST00000567963 SMTNL1A8MU46 457 aa16.19■□□□□ 0.18
CLN3-229ENST00000567963 PRPSAP2O60256 369 aa16.19■□□□□ 0.18
CLN3-229ENST00000567963 TCEA3O75764 348 aa16.19■□□□□ 0.18
CLN3-229ENST00000567963 CELA2BP08218 269 aaPredicted RBP16.19■□□□□ 0.18
CLN3-229ENST00000567963 HTR1BP28222 390 aa16.19■□□□□ 0.18
CLN3-229ENST00000567963 SERPINA4P29622 427 aa16.19■□□□□ 0.18
CLN3-229ENST00000567963 PRKCIP41743 596 aa16.19■□□□□ 0.18
CLN3-229ENST00000567963 HCAR3P49019 387 aa16.19■□□□□ 0.18
CLN3-229ENST00000567963 ELOCQ15369 112 aa16.19■□□□□ 0.18
CLN3-229ENST00000567963 FILIP1LQ4L180 1135 aa16.19■□□□□ 0.18
CLN3-229ENST00000567963 PPP6R3Q5H9R7 873 aaPredicted RBP16.19■□□□□ 0.18
CLN3-229ENST00000567963 E4F1Q66K89 784 aaPredicted RBP16.19■□□□□ 0.18
CLN3-229ENST00000567963 ESRP1Q6NXG1 681 aaKnown RBP16.19■□□□□ 0.18
CLN3-229ENST00000567963 LVRNQ6Q4G3 990 aa16.19■□□□□ 0.18
CLN3-229ENST00000567963 CRTC1Q6UUV9 634 aa16.19■□□□□ 0.18
CLN3-229ENST00000567963 ENPP7Q6UWV6 458 aa16.19■□□□□ 0.18
CLN3-229ENST00000567963 ARHGAP36Q6ZRI8 547 aa16.19■□□□□ 0.18
CLN3-229ENST00000567963 HID1Q8IV36 788 aa16.19■□□□□ 0.18
CLN3-229ENST00000567963 FSTL5Q8N475 847 aaPredicted RBP16.19■□□□□ 0.18
CLN3-229ENST00000567963 NPWQ8N729 165 aa16.19■□□□□ 0.18
CLN3-229ENST00000567963 NAT6Q93015 286 aa16.19■□□□□ 0.18
CLN3-229ENST00000567963 ECHDC3Q96DC8 303 aa16.19■□□□□ 0.18
CLN3-229ENST00000567963 LGMNQ99538 433 aa16.19■□□□□ 0.18
CLN3-229ENST00000567963 ASCL3Q9NQ33 180 aa16.19■□□□□ 0.18
CLN3-229ENST00000567963 CNOT8Q9UFF9 292 aaKnown RBP16.19■□□□□ 0.18
CLN3-229ENST00000567963 PADI4Q9UM07 663 aa16.19■□□□□ 0.18
CLN3-229ENST00000567963 SATB2Q9UPW6 733 aa16.19■□□□□ 0.18
CLN3-229ENST00000567963 ATP8A1Q9Y2Q0 1164 aa16.19■□□□□ 0.18
CLN3-229ENST00000567963 OR1A2Q9Y585 309 aa16.19■□□□□ 0.18
CLN3-229ENST00000567963 ENTPD2Q9Y5L3 495 aa16.19■□□□□ 0.18
CLN3-229ENST00000567963 PTPRQQ9UMZ3 2332 aa16.19■□□□□ 0.18
CLN3-229ENST00000567963 MGAQ8IWI9 3026 aa16.19■□□□□ 0.18
CLN3-229ENST00000567963 A0A1W2PQC6 194 aa16.18■□□□□ 0.18
CLN3-229ENST00000567963 CFAP69A5D8W1 941 aa16.18■□□□□ 0.18
CLN3-229ENST00000567963 DFFAO00273 331 aa16.18■□□□□ 0.18
CLN3-229ENST00000567963 DDX3XO00571 662 aaKnown RBP eCLIP16.18■□□□□ 0.183e-8■■■□□ 15.1
CLN3-229ENST00000567963 LRCH4O75427 683 aa16.18■□□□□ 0.18
CLN3-229ENST00000567963 PRKCGP05129 697 aa16.18■□□□□ 0.18
CLN3-229ENST00000567963 ALPIP09923 528 aa16.18■□□□□ 0.18
CLN3-229ENST00000567963 CTSEP14091 401 aa16.18■□□□□ 0.18
CLN3-229ENST00000567963 ZNF135P52742 658 aaPredicted RBP16.18■□□□□ 0.18
CLN3-229ENST00000567963 SRP54P61011 504 aaKnown RBP16.18■□□□□ 0.18
CLN3-229ENST00000567963 IL10RBQ08334 325 aa16.18■□□□□ 0.18
CLN3-229ENST00000567963 RFTN1Q14699 578 aaPredicted RBP16.18■□□□□ 0.18
CLN3-229ENST00000567963 NFATC4Q14934 902 aa16.18■□□□□ 0.18
CLN3-229ENST00000567963 ALG11Q2TAA5 492 aa16.18■□□□□ 0.18
CLN3-229ENST00000567963 IGF2-ASQ6U949 168 aa16.18■□□□□ 0.18
CLN3-229ENST00000567963 RBM44Q6ZP01 1051 aaKnown RBP16.18■□□□□ 0.18
CLN3-229ENST00000567963 SDR16C5Q8N3Y7 309 aa16.18■□□□□ 0.18
CLN3-229ENST00000567963 WDR48Q8TAF3 677 aa16.18■□□□□ 0.18
CLN3-229ENST00000567963 SCG3Q8WXD2 468 aaKnown RBP16.18■□□□□ 0.18
CLN3-229ENST00000567963 ATXN7L3BQ96GX2 97 aa16.18■□□□□ 0.18
CLN3-229ENST00000567963 NAF1Q96HR8 494 aaKnown RBP16.18■□□□□ 0.18
CLN3-229ENST00000567963 NAP1L5Q96NT1 182 aaPredicted RBP16.18■□□□□ 0.18
CLN3-229ENST00000567963 CCDC3Q9BQI4 270 aa16.18■□□□□ 0.18
CLN3-229ENST00000567963 CINPQ9BW66 212 aaPredicted RBP16.18■□□□□ 0.18
CLN3-229ENST00000567963 EDEM3Q9BZQ6 932 aa16.18■□□□□ 0.18
CLN3-229ENST00000567963 SP110Q9HB58 689 aa16.18■□□□□ 0.18
CLN3-229ENST00000567963 CWC15Q9P013 229 aaKnown RBP16.18■□□□□ 0.18
CLN3-229ENST00000567963 DOLKQ9UPQ8 538 aa16.18■□□□□ 0.18
CLN3-229ENST00000567963 LRP4O75096 1905 aa16.17■□□□□ 0.18
CLN3-229ENST00000567963 A0A1W2PNU3 283 aaPredicted RBP16.17■□□□□ 0.18
CLN3-229ENST00000567963 TRAFD1O14545 582 aaPredicted RBP16.17■□□□□ 0.18
CLN3-229ENST00000567963 CASC3O15234 703 aaKnown RBP16.17■□□□□ 0.18
CLN3-229ENST00000567963 RASGRP1O95267 797 aa16.17■□□□□ 0.18
CLN3-229ENST00000567963 POLR2LP62875 67 aaKnown RBP16.17■□□□□ 0.18
CLN3-229ENST00000567963 BCL2L1Q07817 233 aa16.17■□□□□ 0.18
CLN3-229ENST00000567963 KLHL30Q0D2K2 578 aa16.17■□□□□ 0.18
CLN3-229ENST00000567963 MTM1Q13496 603 aa16.17■□□□□ 0.18
CLN3-229ENST00000567963 DPYSQ14117 519 aa16.17■□□□□ 0.18
CLN3-229ENST00000567963 C3orf38Q5JPI3 329 aa16.17■□□□□ 0.18
CLN3-229ENST00000567963 LIPIQ6XZB0 460 aa16.17■□□□□ 0.18
CLN3-229ENST00000567963 NYAP1Q6ZVC0 841 aa16.17■□□□□ 0.18
CLN3-229ENST00000567963 GPR155Q7Z3F1 870 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 95.2 ms