RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 CELA2BP08218 269 aaPredicted RBP17.25■□□□□ 0.35
CLN3-216ENST00000565316 DESP17661 470 aa17.25■□□□□ 0.35
CLN3-216ENST00000565316 TNFAIP3P21580 790 aa17.25■□□□□ 0.35
CLN3-216ENST00000565316 PSMA2P25787 234 aa17.25■□□□□ 0.35
CLN3-216ENST00000565316 RGRP47804 291 aa17.25■□□□□ 0.35
CLN3-216ENST00000565316 LIG3P49916 1009 aa17.25■□□□□ 0.35
CLN3-216ENST00000565316 PAPOLAP51003 745 aaKnown RBP17.25■□□□□ 0.35
CLN3-216ENST00000565316 SKOR1P84550 965 aa17.25■□□□□ 0.35
CLN3-216ENST00000565316 NFATC4Q14934 902 aa17.25■□□□□ 0.35
CLN3-216ENST00000565316 CA9Q16790 459 aa17.25■□□□□ 0.35
CLN3-216ENST00000565316 ALG11Q2TAA5 492 aa17.25■□□□□ 0.35
CLN3-216ENST00000565316 ERMARDQ5T6L9 678 aa17.25■□□□□ 0.35
CLN3-216ENST00000565316 ERAP2Q6P179 960 aa17.25■□□□□ 0.35
CLN3-216ENST00000565316 SRLQ86TD4 932 aa17.25■□□□□ 0.35
CLN3-216ENST00000565316 ZSWIM9Q86XI8 627 aa17.25■□□□□ 0.35
CLN3-216ENST00000565316 CAMK1DQ8IU85 385 aa17.25■□□□□ 0.35
CLN3-216ENST00000565316 ARHGAP12Q8IWW6 846 aa17.25■□□□□ 0.35
CLN3-216ENST00000565316 CELF6Q96J87 481 aaKnown RBP17.25■□□□□ 0.35
CLN3-216ENST00000565316 GBP4Q96PP9 640 aa17.25■□□□□ 0.35
CLN3-216ENST00000565316 APOOQ9BUR5 198 aa17.25■□□□□ 0.35
CLN3-216ENST00000565316 DPH1Q9BZG8 443 aa17.25■□□□□ 0.35
CLN3-216ENST00000565316 ATP8A1Q9Y2Q0 1164 aa17.25■□□□□ 0.35
CLN3-216ENST00000565316 ARHGAP42A6NI28 874 aa17.24■□□□□ 0.35
CLN3-216ENST00000565316 EEF2KO00418 725 aaKnown RBP17.24■□□□□ 0.35
CLN3-216ENST00000565316 NTN3O00634 580 aaPredicted RBP17.24■□□□□ 0.35
CLN3-216ENST00000565316 TEX33O43247 280 aa17.24■□□□□ 0.35
CLN3-216ENST00000565316 PRB1P04280 392 aa17.24■□□□□ 0.35
CLN3-216ENST00000565316 ALPIP09923 528 aa17.24■□□□□ 0.35
CLN3-216ENST00000565316 PDX1P52945 283 aa17.24■□□□□ 0.35
CLN3-216ENST00000565316 UCNP55089 124 aa17.24■□□□□ 0.35
CLN3-216ENST00000565316 CXADRP78310 365 aa17.24■□□□□ 0.35
CLN3-216ENST00000565316 NSUN2Q08J23 767 aaKnown RBP eCLIP17.24■□□□□ 0.35
CLN3-216ENST00000565316 INPP5AQ14642 412 aa17.24■□□□□ 0.35
CLN3-216ENST00000565316 ELOCQ15369 112 aa17.24■□□□□ 0.35
CLN3-216ENST00000565316 ESRP1Q6NXG1 681 aaKnown RBP17.24■□□□□ 0.35
CLN3-216ENST00000565316 CRTC1Q6UUV9 634 aa17.24■□□□□ 0.35
CLN3-216ENST00000565316 PCSK4Q6UW60 755 aa17.24■□□□□ 0.35
CLN3-216ENST00000565316 RFX8Q6ZV50 586 aa17.24■□□□□ 0.35
CLN3-216ENST00000565316 CYP4V2Q6ZWL3 525 aaPredicted RBP17.24■□□□□ 0.35
CLN3-216ENST00000565316 HID1Q8IV36 788 aa17.24■□□□□ 0.35
CLN3-216ENST00000565316 PSTKQ8IV42 348 aaKnown RBP17.24■□□□□ 0.35
CLN3-216ENST00000565316 ARL10Q8N8L6 244 aa17.24■□□□□ 0.35
CLN3-216ENST00000565316 FNIP1Q8TF40 1166 aa17.24■□□□□ 0.35
CLN3-216ENST00000565316 SCG3Q8WXD2 468 aaKnown RBP17.24■□□□□ 0.35
CLN3-216ENST00000565316 TSACCQ96A04 125 aaPredicted RBP17.24■□□□□ 0.35
CLN3-216ENST00000565316 ECHDC3Q96DC8 303 aa17.24■□□□□ 0.35
CLN3-216ENST00000565316 PEBP4Q96S96 227 aa17.24■□□□□ 0.35
CLN3-216ENST00000565316 KCTD15Q96SI1 283 aaPredicted RBP17.24■□□□□ 0.35
CLN3-216ENST00000565316 CCDC3Q9BQI4 270 aa17.24■□□□□ 0.35
CLN3-216ENST00000565316 EDEM3Q9BZQ6 932 aa17.24■□□□□ 0.35
CLN3-216ENST00000565316 DHX35Q9H5Z1 703 aaKnown RBP17.24■□□□□ 0.35
CLN3-216ENST00000565316 CASC3O15234 703 aaKnown RBP17.23■□□□□ 0.35
CLN3-216ENST00000565316 RASGRP1O95267 797 aa17.23■□□□□ 0.35
CLN3-216ENST00000565316 HTR1BP28222 390 aa17.23■□□□□ 0.35
CLN3-216ENST00000565316 RBMS1P29558 406 aaKnown RBP17.23■□□□□ 0.35
CLN3-216ENST00000565316 MLLT3P42568 568 aaPredicted RBP17.23■□□□□ 0.35
CLN3-216ENST00000565316 HCAR3P49019 387 aa17.23■□□□□ 0.35
CLN3-216ENST00000565316 TMPRSS3P57727 454 aa17.23■□□□□ 0.35
CLN3-216ENST00000565316 SRP54P61011 504 aaKnown RBP17.23■□□□□ 0.35
CLN3-216ENST00000565316 C19orf57Q0VDD7 668 aa17.23■□□□□ 0.35
CLN3-216ENST00000565316 MTM1Q13496 603 aa17.23■□□□□ 0.35
CLN3-216ENST00000565316 RFTN1Q14699 578 aaPredicted RBP17.23■□□□□ 0.35
CLN3-216ENST00000565316 C3orf38Q5JPI3 329 aa17.23■□□□□ 0.35
CLN3-216ENST00000565316 BROXQ5VW32 411 aa17.23■□□□□ 0.35
CLN3-216ENST00000565316 ENPP7Q6UWV6 458 aa17.23■□□□□ 0.35
CLN3-216ENST00000565316 TSEN2Q8NCE0 465 aaKnown RBP17.23■□□□□ 0.35
CLN3-216ENST00000565316 SNRNP27Q8WVK2 155 aaKnown RBP17.23■□□□□ 0.35
CLN3-216ENST00000565316 KCNE4Q8WWG9 221 aa17.23■□□□□ 0.35
CLN3-216ENST00000565316 NAF1Q96HR8 494 aaKnown RBP17.23■□□□□ 0.35
CLN3-216ENST00000565316 SNRNP25Q9BV90 132 aaKnown RBP17.23■□□□□ 0.35
CLN3-216ENST00000565316 ATP13A3Q9H7F0 1226 aa17.23■□□□□ 0.35
CLN3-216ENST00000565316 RTN4Q9NQC3 1192 aaKnown RBP17.23■□□□□ 0.35
CLN3-216ENST00000565316 PCSK1NQ9UHG2 260 aa17.23■□□□□ 0.35
CLN3-216ENST00000565316 DGKBQ9Y6T7 804 aa17.23■□□□□ 0.35
CLN3-216ENST00000565316 SETXQ7Z333 2677 aaKnown RBP17.23■□□□□ 0.35
CLN3-216ENST00000565316 CDRT15L2A8MXV6 281 aa17.22■□□□□ 0.35
CLN3-216ENST00000565316 TMCO5BA8MYB1 307 aa17.22■□□□□ 0.35
CLN3-216ENST00000565316 ATMINO43313 823 aaPredicted RBP17.22■□□□□ 0.35
CLN3-216ENST00000565316 PALMO75781 387 aa17.22■□□□□ 0.35
CLN3-216ENST00000565316 GZMAP12544 262 aa17.22■□□□□ 0.35
CLN3-216ENST00000565316 ERCC2P18074 760 aa17.22■□□□□ 0.35
CLN3-216ENST00000565316 SERPINA4P29622 427 aa17.22■□□□□ 0.35
CLN3-216ENST00000565316 ZNF135P52742 658 aaPredicted RBP17.22■□□□□ 0.35
CLN3-216ENST00000565316 TYRO3Q06418 890 aa17.22■□□□□ 0.35
CLN3-216ENST00000565316 IL10RBQ08334 325 aa17.22■□□□□ 0.35
CLN3-216ENST00000565316 RALGDSQ12967 914 aa17.22■□□□□ 0.35
CLN3-216ENST00000565316 CCDC183Q5T5S1 534 aa17.22■□□□□ 0.35
CLN3-216ENST00000565316 CFAP58Q5T655 872 aa17.22■□□□□ 0.35
CLN3-216ENST00000565316 NYAP1Q6ZVC0 841 aa17.22■□□□□ 0.35
CLN3-216ENST00000565316 AOPEPQ8N6M6 819 aa17.22■□□□□ 0.35
CLN3-216ENST00000565316 NPWQ8N729 165 aa17.22■□□□□ 0.35
CLN3-216ENST00000565316 KYQ8NBH2 561 aa17.22■□□□□ 0.35
CLN3-216ENST00000565316 ATL2Q8NHH9 583 aa17.22■□□□□ 0.35
CLN3-216ENST00000565316 WDR36Q8NI36 951 aaKnown RBP17.22■□□□□ 0.35
CLN3-216ENST00000565316 PCDH19Q8TAB3 1148 aa17.22■□□□□ 0.35
CLN3-216ENST00000565316 SPOCK2Q92563 424 aa17.22■□□□□ 0.35
CLN3-216ENST00000565316 WDR92Q96MX6 357 aa17.22■□□□□ 0.35
CLN3-216ENST00000565316 RBM15Q96T37 977 aaKnown RBP eCLIP17.22■□□□□ 0.35
CLN3-216ENST00000565316 TRIM7Q9C029 511 aa17.22■□□□□ 0.35
CLN3-216ENST00000565316 AIPL1Q9NZN9 384 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms