RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 APOOQ9BUR5 198 aa13.1□□□□□ -0.31
SF3B3-202ENST00000562722 CPEB1Q9BZB8 566 aaKnown RBP13.1□□□□□ -0.31
SF3B3-202ENST00000562722 FOXP3Q9BZS1 431 aa13.1□□□□□ -0.31
SF3B3-202ENST00000562722 SUV39H2Q9H5I1 410 aa13.1□□□□□ -0.31
SF3B3-202ENST00000562722 CHMP5Q9NZZ3 219 aa13.1□□□□□ -0.31
SF3B3-202ENST00000562722 SIGLEC16A6NMB1 481 aa13.09□□□□□ -0.31
SF3B3-202ENST00000562722 D6RAR5 112 aa13.09□□□□□ -0.31
SF3B3-202ENST00000562722 K7ENP7 123 aa13.09□□□□□ -0.31
SF3B3-202ENST00000562722 AGRPO00253 132 aa13.09□□□□□ -0.31
SF3B3-202ENST00000562722 PLD2O14939 933 aa13.09□□□□□ -0.31
SF3B3-202ENST00000562722 TNFP01375 233 aa13.09□□□□□ -0.31
SF3B3-202ENST00000562722 PRKCGP05129 697 aa13.09□□□□□ -0.31
SF3B3-202ENST00000562722 LIG3P49916 1009 aa13.09□□□□□ -0.31
SF3B3-202ENST00000562722 INHBCP55103 352 aa13.09□□□□□ -0.31
SF3B3-202ENST00000562722 CCL7P80098 99 aa13.09□□□□□ -0.31
SF3B3-202ENST00000562722 CLN3Q13286 438 aa13.09□□□□□ -0.31
SF3B3-202ENST00000562722 GRM3Q14832 879 aa13.09□□□□□ -0.31
SF3B3-202ENST00000562722 CYTH1Q15438 398 aa13.09□□□□□ -0.31
SF3B3-202ENST00000562722 UGP2Q16851 508 aa13.09□□□□□ -0.31
SF3B3-202ENST00000562722 DCUN1D2Q6PH85 259 aa13.09□□□□□ -0.31
SF3B3-202ENST00000562722 INO80CQ6PI98 192 aaPredicted RBP13.09□□□□□ -0.31
SF3B3-202ENST00000562722 BRAT1Q6PJG6 821 aa13.09□□□□□ -0.31
SF3B3-202ENST00000562722 RAB11FIP2Q7L804 512 aa13.09□□□□□ -0.31
SF3B3-202ENST00000562722 B3GNT8Q7Z7M8 397 aa13.09□□□□□ -0.31
SF3B3-202ENST00000562722 CLEC14AQ86T13 490 aa13.09□□□□□ -0.31
SF3B3-202ENST00000562722 PHF13Q86YI8 300 aaPredicted RBP13.09□□□□□ -0.31
SF3B3-202ENST00000562722 CAMK1DQ8IU85 385 aa13.09□□□□□ -0.31
SF3B3-202ENST00000562722 UMODL1-AS1Q8N2C9 162 aa13.09□□□□□ -0.31
SF3B3-202ENST00000562722 Q8N9G6 341 aaPredicted RBP13.09□□□□□ -0.31
SF3B3-202ENST00000562722 ANKRD20A12PQ8NF67 263 aa13.09□□□□□ -0.31
SF3B3-202ENST00000562722 ENOX1Q8TC92 643 aaKnown RBP13.09□□□□□ -0.31
SF3B3-202ENST00000562722 TTC9Q92623 222 aa13.09□□□□□ -0.31
SF3B3-202ENST00000562722 LIN37Q96GY3 246 aaPredicted RBP13.09□□□□□ -0.31
SF3B3-202ENST00000562722 CELF6Q96J87 481 aaKnown RBP13.09□□□□□ -0.31
SF3B3-202ENST00000562722 WDR92Q96MX6 357 aa13.09□□□□□ -0.31
SF3B3-202ENST00000562722 SEMA4CQ9C0C4 833 aa13.09□□□□□ -0.31
SF3B3-202ENST00000562722 RABGEF1Q9UJ41 708 aa13.09□□□□□ -0.31
SF3B3-202ENST00000562722 FZD10Q9ULW2 581 aa13.09□□□□□ -0.31
SF3B3-202ENST00000562722 ATP8A1Q9Y2Q0 1164 aa13.09□□□□□ -0.31
SF3B3-202ENST00000562722 TMX2-CTNND1H3BSU7 103 aa13.08□□□□□ -0.32
SF3B3-202ENST00000562722 CACNB4O00305 520 aaPredicted RBP13.08□□□□□ -0.32
SF3B3-202ENST00000562722 NTN3O00634 580 aaPredicted RBP13.08□□□□□ -0.32
SF3B3-202ENST00000562722 JMJD7P0C870 316 aa13.08□□□□□ -0.32
SF3B3-202ENST00000562722 HGFP14210 728 aa13.08□□□□□ -0.32
SF3B3-202ENST00000562722 SERPINA4P29622 427 aa13.08□□□□□ -0.32
SF3B3-202ENST00000562722 SLC5A2P31639 672 aa13.08□□□□□ -0.32
SF3B3-202ENST00000562722 UGT1A5P35504 534 aa13.08□□□□□ -0.32
SF3B3-202ENST00000562722 MMP12P39900 470 aa13.08□□□□□ -0.32
SF3B3-202ENST00000562722 AIF1P55008 147 aa13.08□□□□□ -0.32
SF3B3-202ENST00000562722 GSCP56915 257 aaPredicted RBP13.08□□□□□ -0.32
SF3B3-202ENST00000562722 SKOR1P84550 965 aa13.08□□□□□ -0.32
SF3B3-202ENST00000562722 C1QBPQ07021 282 aaKnown RBP13.08□□□□□ -0.32
SF3B3-202ENST00000562722 EIF3IQ13347 325 aaKnown RBP13.08□□□□□ -0.32
SF3B3-202ENST00000562722 CDKAL1Q5VV42 579 aa13.08□□□□□ -0.32
SF3B3-202ENST00000562722 NYAP1Q6ZVC0 841 aa13.08□□□□□ -0.32
SF3B3-202ENST00000562722 MON1BQ7L1V2 547 aa13.08□□□□□ -0.32
SF3B3-202ENST00000562722 TAF8Q7Z7C8 310 aa13.08□□□□□ -0.32
SF3B3-202ENST00000562722 OR6C4Q8NGE1 309 aa13.08□□□□□ -0.32
SF3B3-202ENST00000562722 HCAR2Q8TDS4 363 aa13.08□□□□□ -0.32
SF3B3-202ENST00000562722 SNRNP27Q8WVK2 155 aaKnown RBP13.08□□□□□ -0.32
SF3B3-202ENST00000562722 PDXPQ96GD0 296 aa13.08□□□□□ -0.32
SF3B3-202ENST00000562722 ZNF641Q96N77 438 aaPredicted RBP13.08□□□□□ -0.32
SF3B3-202ENST00000562722 TMEM74Q96NL1 305 aa13.08□□□□□ -0.32
SF3B3-202ENST00000562722 CCNL2Q96S94 520 aaPredicted RBP13.08□□□□□ -0.32
SF3B3-202ENST00000562722 AGPAT1Q99943 283 aa13.08□□□□□ -0.32
SF3B3-202ENST00000562722 CNPY3Q9BT09 278 aa13.08□□□□□ -0.32
SF3B3-202ENST00000562722 ATP13A3Q9H7F0 1226 aa13.08□□□□□ -0.32
SF3B3-202ENST00000562722 GPATCH2LQ9NWQ4 482 aa13.08□□□□□ -0.32
SF3B3-202ENST00000562722 DONSONQ9NYP3 566 aa13.08□□□□□ -0.32
SF3B3-202ENST00000562722 PISDQ9UG56 409 aa13.08□□□□□ -0.32
SF3B3-202ENST00000562722 HELZ2Q9BYK8 2649 aaKnown RBP13.08□□□□□ -0.32
SF3B3-202ENST00000562722 KALRNO60229 2985 aa13.07□□□□□ -0.32
SF3B3-202ENST00000562722 TSPAN11A1L157 253 aa13.07□□□□□ -0.32
SF3B3-202ENST00000562722 WASH4PA8MWX3 477 aa13.07□□□□□ -0.32
SF3B3-202ENST00000562722 B4DGG1 531 aa13.07□□□□□ -0.32
SF3B3-202ENST00000562722 B8ZZF3 427 aa13.07□□□□□ -0.32
SF3B3-202ENST00000562722 J3KR12 359 aa13.07□□□□□ -0.32
SF3B3-202ENST00000562722 DAPK3O43293 454 aa13.07□□□□□ -0.32
SF3B3-202ENST00000562722 PALMO75781 387 aa13.07□□□□□ -0.32
SF3B3-202ENST00000562722 COPB1P53618 953 aaKnown RBP13.07□□□□□ -0.32
SF3B3-202ENST00000562722 RPL7AP62424 266 aaKnown RBP13.07□□□□□ -0.32
SF3B3-202ENST00000562722 MTM1Q13496 603 aa13.07□□□□□ -0.32
SF3B3-202ENST00000562722 CCNJLQ8IV13 435 aa13.07□□□□□ -0.32
SF3B3-202ENST00000562722 FAM46DQ8NEK8 389 aa13.07□□□□□ -0.32
SF3B3-202ENST00000562722 MED8Q96G25 268 aa13.07□□□□□ -0.32
SF3B3-202ENST00000562722 TUBGCP5Q96RT8 1024 aa13.07□□□□□ -0.32
SF3B3-202ENST00000562722 CINPQ9BW66 212 aaPredicted RBP13.07□□□□□ -0.32
SF3B3-202ENST00000562722 LRRN3Q9H3W5 708 aa13.07□□□□□ -0.32
SF3B3-202ENST00000562722 SP110Q9HB58 689 aa13.07□□□□□ -0.32
SF3B3-202ENST00000562722 PDFQ9HBH1 243 aa13.07□□□□□ -0.32
SF3B3-202ENST00000562722 FANCLQ9NW38 375 aa13.07□□□□□ -0.32
SF3B3-202ENST00000562722 MOSPD1Q9UJG1 213 aa13.07□□□□□ -0.32
SF3B3-202ENST00000562722 ATXN7L1Q9ULK2 861 aaPredicted RBP13.07□□□□□ -0.32
SF3B3-202ENST00000562722 SIK3Q9Y2K2 1263 aa13.07□□□□□ -0.32
SF3B3-202ENST00000562722 LOXL2Q9Y4K0 774 aa13.07□□□□□ -0.32
SF3B3-202ENST00000562722 ZNF462Q96JM2 2506 aa13.06□□□□□ -0.32
SF3B3-202ENST00000562722 COL27A1Q8IZC6 1860 aaPredicted RBP13.06□□□□□ -0.32
SF3B3-202ENST00000562722 A0A1W2PQM1 296 aa13.06□□□□□ -0.32
SF3B3-202ENST00000562722 ARHGAP42A6NI28 874 aa13.06□□□□□ -0.32
SF3B3-202ENST00000562722 PYCARD-AS1I3L0S3 204 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms