RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 CENPLQ8N0S6 344 aaPredicted RBP16.37■□□□□ 0.21
CUX1-213ENST00000549414 C7orf26Q96N11 449 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 OPTCQ9UBM4 332 aa16.37■□□□□ 0.21
CUX1-213ENST00000549414 NEMP2A6NFY4 417 aa16.36■□□□□ 0.21
CUX1-213ENST00000549414 TMEM114B3SHH9 223 aa16.36■□□□□ 0.21
CUX1-213ENST00000549414 PCDH8O95206 1070 aa16.36■□□□□ 0.21
CUX1-213ENST00000549414 C1RP00736 705 aa16.36■□□□□ 0.21
CUX1-213ENST00000549414 PRIM2P49643 509 aa16.36■□□□□ 0.21
CUX1-213ENST00000549414 MAP3K10Q02779 954 aa16.36■□□□□ 0.21
CUX1-213ENST00000549414 DYNC1I2Q13409 638 aaKnown RBP16.36■□□□□ 0.21
CUX1-213ENST00000549414 HECTD2Q5U5R9 776 aa16.36■□□□□ 0.21
CUX1-213ENST00000549414 TMEM199Q8N511 208 aa16.36■□□□□ 0.21
CUX1-213ENST00000549414 PRPF18Q99633 342 aaKnown RBP16.36■□□□□ 0.21
CUX1-213ENST00000549414 GTF2IRD1Q9UHL9 959 aa16.36■□□□□ 0.21
CUX1-213ENST00000549414 FGF1P05230 155 aa16.36■□□□□ 0.21
CUX1-213ENST00000549414 CCNCP24863 283 aa16.36■□□□□ 0.21
CUX1-213ENST00000549414 MC4RP32245 332 aa16.36■□□□□ 0.21
CUX1-213ENST00000549414 IRF9Q00978 393 aa16.36■□□□□ 0.21
CUX1-213ENST00000549414 ZNF252P-AS1Q0IIN9 211 aa16.36■□□□□ 0.21
CUX1-213ENST00000549414 SAMD4BQ5PRF9 694 aaKnown RBP16.36■□□□□ 0.21
CUX1-213ENST00000549414 FUT10Q6P4F1 479 aa16.36■□□□□ 0.21
CUX1-213ENST00000549414 RD3Q7Z3Z2 195 aa16.36■□□□□ 0.21
CUX1-213ENST00000549414 NET1Q7Z628 596 aaPredicted RBP16.36■□□□□ 0.21
CUX1-213ENST00000549414 C11orf74Q86VG3 221 aa16.36■□□□□ 0.21
CUX1-213ENST00000549414 SEC14L1Q92503 715 aa16.36■□□□□ 0.21
CUX1-213ENST00000549414 SLC9A7Q96T83 725 aa16.36■□□□□ 0.21
CUX1-213ENST00000549414 SMOQ99835 787 aa16.36■□□□□ 0.21
CUX1-213ENST00000549414 TEX264Q9Y6I9 313 aa16.36■□□□□ 0.21
CUX1-213ENST00000549414 STRCP1A6NGW2 1772 aa16.36■□□□□ 0.21
CUX1-213ENST00000549414 AGRPO00253 132 aa16.36■□□□□ 0.21
CUX1-213ENST00000549414 ABCB1P08183 1280 aaPredicted RBP16.36■□□□□ 0.21
CUX1-213ENST00000549414 SNRPB2P08579 225 aaKnown RBP16.36■□□□□ 0.21
CUX1-213ENST00000549414 FASP25445 335 aa16.36■□□□□ 0.21
CUX1-213ENST00000549414 PFKPQ01813 784 aa16.36■□□□□ 0.21
CUX1-213ENST00000549414 GK5Q6ZS86 529 aa16.36■□□□□ 0.21
CUX1-213ENST00000549414 CUZD1Q86UP6 607 aa16.36■□□□□ 0.21
CUX1-213ENST00000549414 MAB21L3Q8N8X9 362 aa16.36■□□□□ 0.21
CUX1-213ENST00000549414 ADAM7Q9H2U9 754 aa16.36■□□□□ 0.21
CUX1-213ENST00000549414 PLCH1Q4KWH8 1693 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 IGKV6D-21A0A0A0MT36 114 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 MATN3O15232 486 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 RHOQP17081 205 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 MSH3P20585 1137 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 CORO1AP31146 461 aaKnown RBP16.35■□□□□ 0.21
CUX1-213ENST00000549414 HSPA13P48723 471 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 TCEAL1Q15170 157 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 CLEC6AQ6EIG7 209 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 LRRC8DQ7L1W4 858 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 TRMT11Q7Z4G4 463 aaKnown RBP16.35■□□□□ 0.21
CUX1-213ENST00000549414 DNAJC1Q96KC8 554 aaKnown RBP16.35■□□□□ 0.21
CUX1-213ENST00000549414 CEP19Q96LK0 163 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 DACH2Q96NX9 599 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 VPS45Q9NRW7 570 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 SH3BP4Q9P0V3 963 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 ADAMTS5Q9UNA0 930 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 C10orf71Q711Q0 1435 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 ANKRD36CQ5JPF3 1778 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 MGAT4DA6NG13 374 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 MEIS3P2A8K0S8 358 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 ATP5BP06576 529 aaKnown RBP16.35■□□□□ 0.21
CUX1-213ENST00000549414 HLA-DPA1P20036 260 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 TACR2P21452 398 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 GABRR2P28476 465 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 CDH5P33151 784 aaPredicted RBP16.35■□□□□ 0.21
CUX1-213ENST00000549414 FSTL5Q8N475 847 aaPredicted RBP16.35■□□□□ 0.21
CUX1-213ENST00000549414 RAB42Q8N4Z0 105 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 CASP10Q92851 521 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 TMEM159Q96B96 161 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 HBEGFQ99075 208 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 TCAF1Q9Y4C2 921 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 ATXN2Q99700 1313 aaKnown RBP16.35■□□□□ 0.21
CUX1-213ENST00000549414 OR51F1A6NGY5 319 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 INPP1P49441 399 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 VAC14Q08AM6 782 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 PABPC1LQ4VXU2 614 aaKnown RBP16.35■□□□□ 0.21
CUX1-213ENST00000549414 PPP4R4Q6NUP7 873 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 AMIGO2Q86SJ2 522 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 C10orf82Q8WW14 230 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 IRGQQ8WZA9 623 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 LINGO1Q96FE5 620 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 SCLYQ96I15 445 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 LENG8Q96PV6 779 aaPredicted RBP16.35■□□□□ 0.21
CUX1-213ENST00000549414 CYP2S1Q96SQ9 504 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 SYT11Q9BT88 431 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 CADM1Q9BY67 442 aaKnown RBP16.35■□□□□ 0.21
CUX1-213ENST00000549414 FAM124BQ9H5Z6 455 aaPredicted RBP16.35■□□□□ 0.21
CUX1-213ENST00000549414 CRTAC1Q9NQ79 661 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 EGFL7Q9UHF1 273 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 TRAF6Q9Y4K3 522 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 MARF1Q9Y4F3 1742 aaKnown RBP16.35■□□□□ 0.21
CUX1-213ENST00000549414 IRAK2O43187 625 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 BEST1O76090 585 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 HOXB8P17481 243 aaPredicted RBP16.35■□□□□ 0.21
CUX1-213ENST00000549414 PIK3CGP48736 1102 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 KHDC1Q4VXA5 237 aaKnown RBP16.35■□□□□ 0.21
CUX1-213ENST00000549414 CNSTQ6PJW8 725 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 FIBCD1Q8N539 461 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 NKAPQ8N5F7 415 aaKnown RBP16.35■□□□□ 0.21
CUX1-213ENST00000549414 HIC2Q96JB3 615 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 TAS2R1Q9NYW7 299 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms