RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 SPC25Q9HBM1 224 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 RNF181Q9P0P0 153 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 IFT80Q9P2H3 777 aaPredicted RBP9.53□□□□□ -0.88
CLIP1-214ENST00000540539 WARS2Q9UGM6 360 aaKnown RBP9.53□□□□□ -0.88
CLIP1-214ENST00000540539 BAG5Q9UL15 447 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 IPPQ9Y573 584 aa9.53□□□□□ -0.88
CLIP1-214ENST00000540539 NRCAMQ92823 1304 aa9.52□□□□□ -0.88
CLIP1-214ENST00000540539 KRT87PA6NCN2 255 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 ZBBXA8MT70 800 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 STX16-NPEPL1H3BU86 382 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 I3L521 148 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 LAD1O00515 517 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 AXIN1O15169 862 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 B4GAT1O43505 415 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 ZNF623O75123 536 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 XYLBO75191 536 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 LYPLA1O75608 230 aaPredicted RBP9.52□□□□□ -0.89
CLIP1-214ENST00000540539 PPM1BO75688 479 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 KRT37O76014 449 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 ZSCAN5DPP0CG00 497 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 CYP2A6P11509 494 aaPredicted RBP9.52□□□□□ -0.89
CLIP1-214ENST00000540539 KELP23276 732 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 HTR1BP28222 390 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 HTR7P34969 479 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 SCNN1GP51170 649 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 KLF10Q13118 480 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 ZNF181Q2M3W8 571 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 PLEKHG6Q3KR16 790 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 SLC36A3Q495N2 470 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 FAM26FQ5R3K3 315 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 ARHGEF16Q5VV41 709 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 C16orf89Q6UX73 402 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 PCGF5Q86SE9 256 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 HORMAD1Q86X24 394 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 SLC22A15Q8IZD6 547 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 FNDC5Q8NAU1 212 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 PIWIL2Q8TC59 973 aaKnown RBP9.52□□□□□ -0.89
CLIP1-214ENST00000540539 PNPT1Q8TCS8 783 aaKnown RBP9.52□□□□□ -0.89
CLIP1-214ENST00000540539 TAS1R2Q8TE23 839 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 SLCO4A1Q96BD0 722 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 CALML4Q96GE6 196 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 MSANTD3Q96H12 275 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 ALOXE3Q9BYJ1 711 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 UCK2Q9BZX2 261 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 KCTD10Q9H3F6 313 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 HPS4Q9NQG7 708 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 SDHAF3Q9NRP4 125 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 FBXO28Q9NVF7 368 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 GTF2IRD1Q9UHL9 959 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 TINAGQ9UJW2 476 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 PLLPQ9Y342 182 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 TRAV20A0A0B4J274 112 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 MAGEB6P1A0A0J9YX57 407 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 CCDC194A0A1B0GVG4 234 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 HMX3A6NHT5 357 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 LINC00587B1AMM8 73 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 PLD2O14939 933 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 CFLARO15519 480 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 SSX4O60224 188 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 SSX5O60225 188 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 MAFO75444 373 aaPredicted RBP9.52□□□□□ -0.89
CLIP1-214ENST00000540539 HOXD4P09016 255 aaPredicted RBP9.52□□□□□ -0.89
CLIP1-214ENST00000540539 OR52Z1P0C646 297 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 BMP1P13497 986 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 TCN1P20061 433 aaPredicted RBP9.52□□□□□ -0.89
CLIP1-214ENST00000540539 POU3F3P20264 500 aaPredicted RBP9.52□□□□□ -0.89
CLIP1-214ENST00000540539 NR2F2P24468 414 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 TECP42680 631 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 GPC5P78333 572 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 MRPS5P82675 430 aaKnown RBP9.52□□□□□ -0.89
CLIP1-214ENST00000540539 ELOAQ14241 798 aaKnown RBP9.52□□□□□ -0.89
CLIP1-214ENST00000540539 ZNF124Q15973 351 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 VWA5B1Q5TIE3 1220 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 C9orf131Q5VYM1 1079 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 TMEM236Q5W0B7 351 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 KCNK18Q7Z418 384 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 TLK2Q86UE8 772 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 KYQ8NBH2 561 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 PIK3C3Q8NEB9 887 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 FAM83FQ8NEG4 500 aaPredicted RBP9.52□□□□□ -0.89
CLIP1-214ENST00000540539 ST13P5Q8NFI4 369 aaPredicted RBP9.52□□□□□ -0.89
CLIP1-214ENST00000540539 OR52H1Q8NGJ2 320 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 PPP1R13LQ8WUF5 828 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 CYGBQ8WWM9 190 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 SLC47A1Q96FL8 570 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 GMLQ99445 158 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 ROGDIQ9GZN7 287 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 ADAMTS10Q9H324 1103 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 POLR3BQ9NW08 1133 aaPredicted RBP9.52□□□□□ -0.89
CLIP1-214ENST00000540539 AP4E1Q9UPM8 1137 aa9.52□□□□□ -0.89
CLIP1-214ENST00000540539 RPH3AQ9Y2J0 694 aaPredicted RBP9.52□□□□□ -0.89
CLIP1-214ENST00000540539 ZNF541Q9H0D2 1346 aa9.51□□□□□ -0.89
CLIP1-214ENST00000540539 LAMB1P07942 1786 aa9.51□□□□□ -0.89
CLIP1-214ENST00000540539 ATRNL1Q5VV63 1379 aa9.51□□□□□ -0.89
CLIP1-214ENST00000540539 SAC3D1A6NKF1 404 aa9.51□□□□□ -0.89
CLIP1-214ENST00000540539 C19orf81C9J6K1 198 aa9.51□□□□□ -0.89
CLIP1-214ENST00000540539 GOLGA8SH3BPF8 625 aa9.51□□□□□ -0.89
CLIP1-214ENST00000540539 PIK3R2O00459 728 aa9.51□□□□□ -0.89
CLIP1-214ENST00000540539 ZBTB5O15062 677 aa9.51□□□□□ -0.89
CLIP1-214ENST00000540539 MYL4P12829 197 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms