RNA–Protein interactions for RNA: ENST00000535452.5

CLSTN3-205, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-205ENST00000535452 PIGNO95427 931 aa13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 CD160O95971 181 aa13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 JMJD7P0C870 316 aa13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 MYBL1P10243 752 aa13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 MYF5P13349 255 aa13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 C6P13671 934 aa13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 TIMP2P16035 220 aa13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 IGFALSP35858 605 aa13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 HSPA9P38646 679 aaKnown RBP13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 PPM1FP49593 454 aaPredicted RBP13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 LIG3P49916 1009 aa13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 SRP54P61011 504 aaKnown RBP13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 RPL7AP62424 266 aaKnown RBP13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 EIF2B5Q13144 721 aaKnown RBP13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 ARHGEF7Q14155 803 aa13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 TAF8Q7Z7C8 310 aa13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 ZNF605Q86T29 641 aa13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 SRLQ86TD4 932 aa13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 JAMLQ86YT9 394 aa13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 PSTKQ8IV42 348 aaKnown RBP13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 KIAA1524Q8TCG1 905 aa13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 ATXN7L3BQ96GX2 97 aa13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 CELF6Q96J87 481 aaKnown RBP13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 APOOQ9BUR5 198 aa13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 ZMYND15Q9H091 742 aa13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 EPB41L5Q9HCM4 733 aa13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 PCDH12Q9NPG4 1184 aa13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 SEPT3Q9UH03 358 aa13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 PCSK1NQ9UHG2 260 aa13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 PCDHGA8Q9Y5G5 932 aa13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 KNTC1P50748 2209 aa13.35□□□□□ -0.27
CLSTN3-205ENST00000535452 ASPMQ8IZT6 3477 aa13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 GOLGA6CA6NDK9 693 aa13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 GOLGA6BA6NDN3 693 aa13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 RNF103O00237 685 aa13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 EPHB6O15197 1021 aa13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 YY2O15391 372 aa13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 SPINT1O43278 529 aa13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 PRAMEF11O60813 436 aa13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 TNFSF15O95150 251 aa13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 GOLGA6DP0CG33 693 aa13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 TGM2P21980 687 aa13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 SERPINB6P35237 376 aa13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 CSNK1DP48730 415 aa13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 PAPOLAP51003 745 aaKnown RBP13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 SCNN1BP51168 640 aa13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 AP1S1P61966 158 aa13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 PTP4A2Q12974 167 aa13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 INPP5AQ14642 412 aa13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 ACOX1Q15067 660 aa13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 RAB6CQ53S08 254 aa13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 PPP1R15BQ5SWA1 713 aa13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 TMEM164Q5U3C3 297 aa13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 CCDC81Q6ZN84 652 aa13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 RFX8Q6ZV50 586 aa13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 AOPEPQ8N6M6 819 aa13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 TP53I13Q8NBR0 393 aaPredicted RBP13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 PDCD6IPQ8WUM4 868 aaKnown RBP13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 RAB6CQ9H0N0 254 aa13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 GOLGA6AQ9NYA3 693 aa13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 SEPT10Q9P0V9 454 aa13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 CNOT8Q9UFF9 292 aaKnown RBP13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 PCDHB11Q9Y5F2 797 aa13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 DOCK4Q8N1I0 1966 aa13.34□□□□□ -0.27
CLSTN3-205ENST00000535452 LRRC10BA6NIK2 292 aa13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 SERPINC1P01008 464 aa13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 GIMD1P0DJR0 217 aa13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 CYP2A6P11509 494 aaPredicted RBP13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 ATP1A3P13637 1013 aa13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 NOP2P46087 812 aaKnown RBP13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 INHBCP55103 352 aa13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 IL10RBQ08334 325 aa13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 VAC14Q08AM6 782 aa13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 NSUN2Q08J23 767 aaKnown RBP eCLIP13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 KLHL30Q0D2K2 578 aa13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 CYTH1Q15438 398 aa13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 ZSCAN23Q3MJ62 389 aa13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 ARHGAP40Q5TG30 622 aa13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 IGF2-ASQ6U949 168 aa13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 TMCO3Q6UWJ1 677 aa13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 CLEC17AQ6ZS10 378 aa13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 RBM43Q6ZSC3 357 aaKnown RBP13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 CAMK1DQ8IU85 385 aa13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 SLC35F3Q8IY50 421 aa13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 FBXO39Q8N4B4 442 aa13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 ZSCAN1Q8NBB4 408 aa13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 OR56A4Q8NGH8 313 aa13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 PCDH19Q8TAB3 1148 aa13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 TSACCQ96A04 125 aaPredicted RBP13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 TMEM159Q96B96 161 aa13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 ZNF653Q96CK0 615 aa13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 CRELD1Q96HD1 420 aa13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 ZNF599Q96NL3 588 aa13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 DPEP2Q9H4A9 486 aa13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 WDR26Q9H7D7 661 aa13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 MBNL1Q9NR56 388 aaKnown RBP13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 PHPT1Q9NRX4 125 aaPredicted RBP13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 LHX3Q9UBR4 397 aa13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 KLF15Q9UIH9 416 aa13.33□□□□□ -0.28
CLSTN3-205ENST00000535452 COQ6Q9Y2Z9 468 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms