RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 ZNF641Q96N77 438 aaPredicted RBP11.45□□□□□ -0.58
VPS28-214ENST00000531032 TUBGCP5Q96RT8 1024 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 CCDC3Q9BQI4 270 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 EDEM3Q9BZQ6 932 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 SUV39H2Q9H5I1 410 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 CPNE5Q9HCH3 593 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 ANO10Q9NW15 660 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 DONSONQ9NYP3 566 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 PADI4Q9UM07 663 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 COQ6Q9Y2Z9 468 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 KIF26BQ2KJY2 2108 aa11.45□□□□□ -0.58
VPS28-214ENST00000531032 PMS2P1A4D2B8 440 aa11.44□□□□□ -0.58
VPS28-214ENST00000531032 EIF3CLB5ME19 914 aaKnown RBP11.44□□□□□ -0.58
VPS28-214ENST00000531032 J3KR12 359 aa11.44□□□□□ -0.58
VPS28-214ENST00000531032 BUB1BO60566 1050 aaPredicted RBP11.44□□□□□ -0.58
VPS28-214ENST00000531032 RASGRP1O95267 797 aa11.44□□□□□ -0.58
VPS28-214ENST00000531032 ALPIP09923 528 aa11.44□□□□□ -0.58
VPS28-214ENST00000531032 DESP17661 470 aa11.44□□□□□ -0.58
VPS28-214ENST00000531032 HTR1BP28222 390 aa11.44□□□□□ -0.58
VPS28-214ENST00000531032 CSNK1DP48730 415 aa11.44□□□□□ -0.58
VPS28-214ENST00000531032 TPI1P60174 286 aa11.44□□□□□ -0.58
VPS28-214ENST00000531032 UBXN1Q04323 297 aa11.44□□□□□ -0.58
VPS28-214ENST00000531032 SPIDRQ14159 915 aa11.44□□□□□ -0.58
VPS28-214ENST00000531032 INPP5AQ14642 412 aa11.44□□□□□ -0.58
VPS28-214ENST00000531032 CCDC183Q5T5S1 534 aa11.44□□□□□ -0.58
VPS28-214ENST00000531032 ARHGAP40Q5TG30 622 aa11.44□□□□□ -0.58
VPS28-214ENST00000531032 ACAD10Q6JQN1 1059 aa11.44□□□□□ -0.58
VPS28-214ENST00000531032 ERAP2Q6P179 960 aa11.44□□□□□ -0.58
VPS28-214ENST00000531032 DCUN1D2Q6PH85 259 aa11.44□□□□□ -0.58
VPS28-214ENST00000531032 APTXQ7Z2E3 356 aaKnown RBP11.44□□□□□ -0.58
VPS28-214ENST00000531032 CLEC14AQ86T13 490 aa11.44□□□□□ -0.58
VPS28-214ENST00000531032 ZSWIM9Q86XI8 627 aa11.44□□□□□ -0.58
VPS28-214ENST00000531032 HID1Q8IV36 788 aa11.44□□□□□ -0.58
VPS28-214ENST00000531032 KYQ8NBH2 561 aa11.44□□□□□ -0.58
VPS28-214ENST00000531032 WDR36Q8NI36 951 aaKnown RBP11.44□□□□□ -0.58
VPS28-214ENST00000531032 SCG3Q8WXD2 468 aaKnown RBP11.44□□□□□ -0.58
VPS28-214ENST00000531032 TSACCQ96A04 125 aaPredicted RBP11.44□□□□□ -0.58
VPS28-214ENST00000531032 CCDC97Q96F63 343 aaPredicted RBP11.44□□□□□ -0.58
VPS28-214ENST00000531032 LIN37Q96GY3 246 aaPredicted RBP11.44□□□□□ -0.58
VPS28-214ENST00000531032 EIF3CQ99613 913 aaKnown RBP11.44□□□□□ -0.58
VPS28-214ENST00000531032 SYT11Q9BT88 431 aa11.44□□□□□ -0.58
VPS28-214ENST00000531032 APOOQ9BUR5 198 aa11.44□□□□□ -0.58
VPS28-214ENST00000531032 HSD3B7Q9H2F3 369 aa11.44□□□□□ -0.58
VPS28-214ENST00000531032 AP4E1Q9UPM8 1137 aa11.44□□□□□ -0.58
VPS28-214ENST00000531032 DOLKQ9UPQ8 538 aa11.44□□□□□ -0.58
VPS28-214ENST00000531032 ATP8A1Q9Y2Q0 1164 aa11.44□□□□□ -0.58
VPS28-214ENST00000531032 OR1A2Q9Y585 309 aa11.44□□□□□ -0.58
VPS28-214ENST00000531032 ZNF462Q96JM2 2506 aa11.44□□□□□ -0.58
VPS28-214ENST00000531032 ANKRD36A6QL64 1941 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 CCDC187A0A096LP49 1063 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 CFAP69A5D8W1 941 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 ARHGAP42A6NI28 874 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 ITGA2BP08514 1039 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 CCDC172P0C7W6 258 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 CTSEP14091 401 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 PLA2G2AP14555 144 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 FERP16591 822 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 RGRP47804 291 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 LIG3P49916 1009 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 PAPOLAP51003 745 aaKnown RBP11.43□□□□□ -0.58
VPS28-214ENST00000531032 SRP54P61011 504 aaKnown RBP11.43□□□□□ -0.58
VPS28-214ENST00000531032 CFHR1Q03591 330 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 VAC14Q08AM6 782 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 MAMLD1Q13495 774 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 MTM1Q13496 603 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 CFAP58Q5T655 872 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 AFMIDQ63HM1 303 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 ENPP7Q6UWV6 458 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 NYAP1Q6ZVC0 841 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 GKN2Q86XP6 184 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 CAMK1DQ8IU85 385 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 ARL14Q8N4G2 192 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 ATL2Q8NHH9 583 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 CCDC74AQ96AQ1 378 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 ECHDC3Q96DC8 303 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 CELF6Q96J87 481 aaKnown RBP11.43□□□□□ -0.58
VPS28-214ENST00000531032 WDR92Q96MX6 357 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 SLC39A8Q9C0K1 460 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 ATP13A3Q9H7F0 1226 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 GPATCH2LQ9NWQ4 482 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 TAS2R14Q9NYV8 317 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 SIRPGQ9P1W8 387 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 KLQ9UEF7 1012 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 RABGEF1Q9UJ41 708 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 DGKBQ9Y6T7 804 aa11.43□□□□□ -0.58
VPS28-214ENST00000531032 CAPN8A6NHC0 703 aa11.42□□□□□ -0.58
VPS28-214ENST00000531032 D6RAR5 112 aa11.42□□□□□ -0.58
VPS28-214ENST00000531032 K7ENP7 123 aa11.42□□□□□ -0.58
VPS28-214ENST00000531032 EEF2KO00418 725 aaKnown RBP11.42□□□□□ -0.58
VPS28-214ENST00000531032 TNFSF15O95150 251 aa11.42□□□□□ -0.58
VPS28-214ENST00000531032 PRKCGP05129 697 aa11.42□□□□□ -0.58
VPS28-214ENST00000531032 PCCBP05166 539 aa11.42□□□□□ -0.58
VPS28-214ENST00000531032 PSMA2P25787 234 aa11.42□□□□□ -0.58
VPS28-214ENST00000531032 SERPINA4P29622 427 aa11.42□□□□□ -0.58
VPS28-214ENST00000531032 RALGDSQ12967 914 aa11.42□□□□□ -0.58
VPS28-214ENST00000531032 EIF3IQ13347 325 aaKnown RBP11.42□□□□□ -0.58
VPS28-214ENST00000531032 NCAPHQ15003 741 aa11.42□□□□□ -0.58
VPS28-214ENST00000531032 CA9Q16790 459 aa11.42□□□□□ -0.58
VPS28-214ENST00000531032 TAF1BQ53T94 588 aaPredicted RBP11.42□□□□□ -0.58
VPS28-214ENST00000531032 KCTD16Q68DU8 428 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms