RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 PAPPA-AS1Q5QFB9 102 aa4.09□□□□□ -1.75
CD44-217ENST00000525348 SERTAD4-AS1Q5TG53 156 aa4.09□□□□□ -1.75
CD44-217ENST00000525348 SLC22A25Q6T423 547 aa4.09□□□□□ -1.75
CD44-217ENST00000525348 GPAT4Q86UL3 456 aa4.09□□□□□ -1.75
CD44-217ENST00000525348 ANKRD18AQ8IVF6 992 aa4.09□□□□□ -1.75
CD44-217ENST00000525348 ZBTB10Q96DT7 871 aa4.09□□□□□ -1.75
CD44-217ENST00000525348 IGSF21Q96ID5 467 aa4.09□□□□□ -1.75
CD44-217ENST00000525348 UBXN10Q96LJ8 280 aa4.09□□□□□ -1.75
CD44-217ENST00000525348 LRFN5Q96NI6 719 aa4.09□□□□□ -1.75
CD44-217ENST00000525348 CSF3RQ99062 836 aa4.09□□□□□ -1.75
CD44-217ENST00000525348 MXRA8Q9BRK3 442 aa4.09□□□□□ -1.75
CD44-217ENST00000525348 SAGE1Q9NXZ1 904 aa4.09□□□□□ -1.75
CD44-217ENST00000525348 IL1RAPL1Q9NZN1 696 aa4.09□□□□□ -1.75
CD44-217ENST00000525348 KIAA1456Q9P272 454 aa4.09□□□□□ -1.75
CD44-217ENST00000525348 MALT1Q9UDY8 824 aa4.09□□□□□ -1.75
CD44-217ENST00000525348 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.09□□□□□ -1.75
CD44-217ENST00000525348 GOLGA6L10A0A0M3HER8 536 aa4.08□□□□□ -1.76
CD44-217ENST00000525348 hDV102S1A0JD36 115 aa4.08□□□□□ -1.76
CD44-217ENST00000525348 PLEKHD1A6NEE1 506 aa4.08□□□□□ -1.76
CD44-217ENST00000525348 TEX22C9J3V5 150 aa4.08□□□□□ -1.76
CD44-217ENST00000525348 NACADO15069 1562 aa4.08□□□□□ -1.76
CD44-217ENST00000525348 ZIC3O60481 467 aa4.08□□□□□ -1.76
CD44-217ENST00000525348 ZNF432O94892 652 aa4.08□□□□□ -1.76
CD44-217ENST00000525348 POLBP06746 335 aa4.08□□□□□ -1.76
CD44-217ENST00000525348 DLX5P56178 289 aa4.08□□□□□ -1.76
CD44-217ENST00000525348 EFNB1P98172 346 aa4.08□□□□□ -1.76
CD44-217ENST00000525348 POU5F1BQ06416 359 aa4.08□□□□□ -1.76
CD44-217ENST00000525348 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.08□□□□□ -1.76
CD44-217ENST00000525348 NFIL3Q16649 462 aa4.08□□□□□ -1.76
CD44-217ENST00000525348 ZNF718Q3SXZ3 478 aa4.08□□□□□ -1.76
CD44-217ENST00000525348 ANKRD54Q6NXT1 300 aa4.08□□□□□ -1.76
CD44-217ENST00000525348 KLHL24Q6TFL4 600 aa4.08□□□□□ -1.76
CD44-217ENST00000525348 EXOC8Q8IYI6 725 aa4.08□□□□□ -1.76
CD44-217ENST00000525348 TMTC2Q8N394 836 aa4.08□□□□□ -1.76
CD44-217ENST00000525348 TNIP2Q8NFZ5 429 aa4.08□□□□□ -1.76
CD44-217ENST00000525348 SPATA20Q8TB22 786 aa4.08□□□□□ -1.76
CD44-217ENST00000525348 DNASE2BQ8WZ79 361 aa4.08□□□□□ -1.76
CD44-217ENST00000525348 ZC3HAV1LQ96H79 300 aaKnown RBP4.08□□□□□ -1.76
CD44-217ENST00000525348 MAELQ96JY0 434 aaKnown RBP4.08□□□□□ -1.76
CD44-217ENST00000525348 GPR63Q9BZJ6 419 aa4.08□□□□□ -1.76
CD44-217ENST00000525348 INTS2Q9H0H0 1204 aaKnown RBP4.08□□□□□ -1.76
CD44-217ENST00000525348 RETREG1Q9H6L5 497 aa4.08□□□□□ -1.76
CD44-217ENST00000525348 BABAM1Q9NWV8 329 aa4.08□□□□□ -1.76
CD44-217ENST00000525348 CISD1Q9NZ45 108 aaKnown RBP4.08□□□□□ -1.76
CD44-217ENST00000525348 NFE2L3Q9Y4A8 694 aa4.08□□□□□ -1.76
CD44-217ENST00000525348 NFS1Q9Y697 457 aa4.08□□□□□ -1.76
CD44-217ENST00000525348 TULP2O00295 520 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 CLGNO14967 610 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 NDUFS7O75251 213 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 TACC1O75410 805 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 KDM4BO94953 1096 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 HEXAP06865 529 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 GALTP07902 379 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 HSD3B1P14060 373 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 DAOP14920 347 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 HNRNPH1P31943 449 aaKnown RBP4.07□□□□□ -1.76
CD44-217ENST00000525348 PSMC2P35998 433 aaKnown RBP4.07□□□□□ -1.76
CD44-217ENST00000525348 PGM1P36871 562 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 GPD2P43304 727 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 CDH15P55291 814 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 MMEL1Q495T6 779 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 ZNF672Q499Z4 452 aaPredicted RBP4.07□□□□□ -1.76
CD44-217ENST00000525348 HIST2H2BCQ6DN03 193 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 HIST2H2BDQ6DRA6 164 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 TMEM81Q6P7N7 255 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 B3GNT6Q6ZMB0 384 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 LRRC8DQ7L1W4 858 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 ZNF771Q7L3S4 317 aaPredicted RBP4.07□□□□□ -1.76
CD44-217ENST00000525348 TADA2BQ86TJ2 420 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 ZC3HC1Q86WB0 502 aaKnown RBP4.07□□□□□ -1.76
CD44-217ENST00000525348 TMTC1Q8IUR5 882 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 DHX40Q8IX18 779 aaKnown RBP4.07□□□□□ -1.76
CD44-217ENST00000525348 SPATA22Q8NHS9 363 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 TRIM63Q969Q1 353 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 BICD1Q96G01 975 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 DUX5Q96PT3 197 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 GLIS2Q9BZE0 524 aaPredicted RBP4.07□□□□□ -1.76
CD44-217ENST00000525348 SPRY4Q9C004 299 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 C20orf141Q9NUB4 165 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 BEX4Q9NWD9 120 aaPredicted RBP4.07□□□□□ -1.76
CD44-217ENST00000525348 LUZP4Q9P127 313 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 SLC25A10Q9UBX3 287 aaPredicted RBP4.07□□□□□ -1.76
CD44-217ENST00000525348 SLCO3A1Q9UIG8 710 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 ZNF112Q9UJU3 913 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 CDC14AQ9UNH5 594 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 PAM16Q9Y3D7 125 aa4.07□□□□□ -1.76
CD44-217ENST00000525348 SAA2-SAA4A0A096LPE2 208 aa4.06□□□□□ -1.76
CD44-217ENST00000525348 DENND3A2RUS2 1198 aa4.06□□□□□ -1.76
CD44-217ENST00000525348 PRAC2D3DTV9 90 aa4.06□□□□□ -1.76
CD44-217ENST00000525348 LDLRAD4O15165 306 aa4.06□□□□□ -1.76
CD44-217ENST00000525348 LDB3O75112 727 aa4.06□□□□□ -1.76
CD44-217ENST00000525348 NDUFB4O95168 129 aa4.06□□□□□ -1.76
CD44-217ENST00000525348 CLDN14O95500 239 aa4.06□□□□□ -1.76
CD44-217ENST00000525348 PMS2P2O95744 297 aa4.06□□□□□ -1.76
CD44-217ENST00000525348 HNRNPA1P09651 372 aaKnown RBP eCLIP4.06□□□□□ -1.76
CD44-217ENST00000525348 LINC00271P0C7V0 271 aa4.06□□□□□ -1.76
CD44-217ENST00000525348 PCNAP12004 261 aa4.06□□□□□ -1.76
CD44-217ENST00000525348 GGT5P36269 586 aa4.06□□□□□ -1.76
CD44-217ENST00000525348 CALD1Q05682 793 aaKnown RBP4.06□□□□□ -1.76
CD44-217ENST00000525348 TAF11Q15544 211 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms