RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 COMTP21964 271 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 MAN1A1P33908 653 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 SERPINB6P35237 376 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 GARSP41250 739 aaKnown RBP11.57□□□□□ -0.56
VCAN-212ENST00000515397 MMP13P45452 471 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 RENBPP51606 427 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 DYNLT1P63172 113 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 GALNT2Q10471 571 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 TRAF2Q12933 501 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 EIF2B5Q13144 721 aaKnown RBP11.57□□□□□ -0.56
VCAN-212ENST00000515397 C1orf61Q13536 156 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 PAFAH1B3Q15102 231 aaKnown RBP11.57□□□□□ -0.56
VCAN-212ENST00000515397 PDK2Q15119 407 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 IRF4Q15306 451 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 ERAP2Q6P179 960 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 BRAT1Q6PJG6 821 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 DHRS13Q6UX07 377 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 KYAT3Q6YP21 454 aaKnown RBP11.57□□□□□ -0.56
VCAN-212ENST00000515397 GLRX5Q86SX6 157 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 MAP7D3Q8IWC1 876 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 RHOT2Q8IXI1 618 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 RBFAQ8N0V3 343 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 PELI3Q8N2H9 469 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 TP53I13Q8NBR0 393 aaPredicted RBP11.57□□□□□ -0.56
VCAN-212ENST00000515397 PLA2G15Q8NCC3 412 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 NSMCE1Q8WV22 266 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 FUBP1Q96AE4 644 aaKnown RBP11.57□□□□□ -0.56
VCAN-212ENST00000515397 ZNF599Q96NL3 588 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 RNF157Q96PX1 679 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 TUBGCP5Q96RT8 1024 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 LGMNQ99538 433 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 SEMA3CQ99985 751 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 ZNF670Q9BS34 389 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 CEP41Q9BYV8 373 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 RBM22Q9NW64 420 aaKnown RBP eCLIP11.57□□□□□ -0.56
VCAN-212ENST00000515397 RCOR3Q9P2K3 495 aaPredicted RBP11.57□□□□□ -0.56
VCAN-212ENST00000515397 SALL4Q9UJQ4 1053 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 ATP8A1Q9Y2Q0 1164 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 OR1A2Q9Y585 309 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 PCDHA13Q9Y5I0 950 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 HEY1Q9Y5J3 304 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 DUSP10Q9Y6W6 482 aa11.57□□□□□ -0.56
VCAN-212ENST00000515397 ASPMQ8IZT6 3477 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 SPTY2D1-AS1A0A0U1RR47 76 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 KCNK1O00180 336 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 JCHAINP01591 159 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 PDHA1P08559 390 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 MMP12P39900 470 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 ARHGAP25P42331 645 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 RABIFP47224 123 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 PFN3P60673 137 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 CACNA1BQ00975 2339 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 DSC2Q02487 901 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 ELP6Q0PNE2 266 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 RALGDSQ12967 914 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 INPP5AQ14642 412 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 GRM3Q14832 879 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 LRRC14Q15048 493 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 KAZNQ674X7 775 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 KCTD16Q68DU8 428 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 MFSD7Q6UXD7 560 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 RD3Q7Z3Z2 195 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 RFX6Q8HWS3 928 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 OXR1Q8N573 874 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 SPC24Q8NBT2 197 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 LMX1AQ8TE12 382 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 ADAMTS14Q8WXS8 1223 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 TSACCQ96A04 125 aaPredicted RBP11.56□□□□□ -0.56
VCAN-212ENST00000515397 FAF2Q96CS3 445 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 ECHDC3Q96DC8 303 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 MRFAP1L1Q96HT8 127 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 NUDCD1Q96RS6 583 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 MGME1Q9BQP7 344 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 MAK16Q9BXY0 300 aaKnown RBP11.56□□□□□ -0.56
VCAN-212ENST00000515397 DTLQ9NZJ0 730 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 SAE1Q9UBE0 346 aaPredicted RBP11.56□□□□□ -0.56
VCAN-212ENST00000515397 B4GALT6Q9UBX8 382 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 ALG6Q9Y672 507 aa11.56□□□□□ -0.56
VCAN-212ENST00000515397 MATN3O15232 486 aa11.55□□□□□ -0.56
VCAN-212ENST00000515397 HTRA2O43464 458 aaPredicted RBP11.55□□□□□ -0.56
VCAN-212ENST00000515397 SPOPO43791 374 aa11.55□□□□□ -0.56
VCAN-212ENST00000515397 RECQL5O94762 991 aaPredicted RBP11.55□□□□□ -0.56
VCAN-212ENST00000515397 MTA2O94776 668 aa11.55□□□□□ -0.56
VCAN-212ENST00000515397 TRIM16O95361 564 aa11.55□□□□□ -0.56
VCAN-212ENST00000515397 CELA2BP08218 269 aaPredicted RBP11.55□□□□□ -0.56
VCAN-212ENST00000515397 ALPIP09923 528 aa11.55□□□□□ -0.56
VCAN-212ENST00000515397 GIMD1P0DJR0 217 aa11.55□□□□□ -0.56
VCAN-212ENST00000515397 KRT10P13645 584 aa11.55□□□□□ -0.56
VCAN-212ENST00000515397 JUNDP17535 347 aa11.55□□□□□ -0.56
VCAN-212ENST00000515397 GM2AP17900 193 aa11.55□□□□□ -0.56
VCAN-212ENST00000515397 MARCKSL1P49006 195 aa11.55□□□□□ -0.56
VCAN-212ENST00000515397 THOP1P52888 689 aa11.55□□□□□ -0.56
VCAN-212ENST00000515397 AP1S1P61966 158 aa11.55□□□□□ -0.56
VCAN-212ENST00000515397 ADCY2Q08462 1091 aa11.55□□□□□ -0.56
VCAN-212ENST00000515397 NIPAL4Q0D2K0 466 aa11.55□□□□□ -0.56
VCAN-212ENST00000515397 ACOX1Q15067 660 aa11.55□□□□□ -0.56
VCAN-212ENST00000515397 IFI16Q16666 785 aaKnown RBP11.55□□□□□ -0.56
VCAN-212ENST00000515397 RAD9BQ6WBX8 426 aa11.55□□□□□ -0.56
VCAN-212ENST00000515397 LIPIQ6XZB0 460 aa11.55□□□□□ -0.56
VCAN-212ENST00000515397 RFLNAQ6ZTI6 216 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms