RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 LYPLAL1Q5VWZ2 237 aa11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 NEPROQ6NW34 567 aa11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 UBA3Q8TBC4 463 aa11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 ROPN1LQ96C74 230 aa11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 IL1RAPQ9NPH3 570 aa11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 ZNF446Q9NWS9 450 aa11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 RABL2AQ9UBK7 228 aaPredicted RBP11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 RABL2BQ9UNT1 228 aa11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 PCDHA11Q9Y5I1 949 aa11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 MAU2Q9Y6X3 613 aa11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 PZPP20742 1482 aa11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 CAPN8A6NHC0 703 aa11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 ADAMDEC1O15204 470 aa11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 DNAJB5O75953 348 aa11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 ERBB2P04626 1255 aa11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 CYP1A2P05177 515 aa11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 GNAO1P09471 354 aa11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 CLK3P49761 638 aaKnown RBP11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 GSCP56915 257 aaPredicted RBP11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 ADAM8P78325 824 aa11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 MTM1Q13496 603 aa11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 HYIQ5T013 277 aa11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 VWA5B1Q5TIE3 1220 aa11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 DNAJC14Q6Y2X3 702 aaPredicted RBP11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 RAB11FIP2Q7L804 512 aa11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 ADAMTSL2Q86TH1 951 aa11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 MARCH10Q8NA82 808 aaPredicted RBP11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 SMG8Q8ND04 991 aaKnown RBP11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 LSM14AQ8ND56 463 aaKnown RBP11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 ZSWIM2Q8NEG5 633 aa11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 SMARCD1Q96GM5 515 aa11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 PCDHGA4Q9Y5G9 962 aa11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 OAS3Q9Y6K5 1087 aaKnown RBP11.28□□□□□ -0.6
LIMCH1-208ENST00000508501 LRRC10BA6NIK2 292 aa11.27□□□□□ -0.6
LIMCH1-208ENST00000508501 H7C4K7 107 aa11.27□□□□□ -0.6
LIMCH1-208ENST00000508501 GPSM2P81274 684 aa11.27□□□□□ -0.6
LIMCH1-208ENST00000508501 C4orf46Q504U0 113 aa11.27□□□□□ -0.6
LIMCH1-208ENST00000508501 KLHL22Q53GT1 634 aa11.27□□□□□ -0.6
LIMCH1-208ENST00000508501 PPP1R15BQ5SWA1 713 aa11.27□□□□□ -0.6
LIMCH1-208ENST00000508501 GLB1LQ6UWU2 654 aa11.27□□□□□ -0.6
LIMCH1-208ENST00000508501 RXFP2Q8WXD0 754 aa11.27□□□□□ -0.6
LIMCH1-208ENST00000508501 TOP1MTQ969P6 601 aa11.27□□□□□ -0.6
LIMCH1-208ENST00000508501 CCDC3Q9BQI4 270 aa11.27□□□□□ -0.6
LIMCH1-208ENST00000508501 MXRA8Q9BRK3 442 aa11.27□□□□□ -0.6
LIMCH1-208ENST00000508501 ZNF335Q9H4Z2 1342 aaPredicted RBP11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 WDR27A2RRH5 827 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 CYP7B1O75881 506 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 ARCN1P48444 511 aaKnown RBP11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 CCSAPQ6IQ19 270 aaPredicted RBP11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 TRABD2AQ86V40 505 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 ATCAYQ86WG3 371 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 GALNT12Q8IXK2 581 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 LMAN2LQ9H0V9 348 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 UNC93B1Q9H1C4 597 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 DNAJC18Q9H819 358 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 TMEM5Q9Y2B1 443 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 TAF6LQ9Y6J9 622 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 BTN3A1O00481 513 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 FADS2O95864 444 aaKnown RBP11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 MT-CO1P00395 513 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 HMGCRP04035 888 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 PAEPP09466 180 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 EPCAMP16422 314 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 MGAT1P26572 445 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 SSTR3P32745 418 aaPredicted RBP11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 ACSL1P33121 698 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 TCF7P36402 384 aaPredicted RBP11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 CRKLP46109 303 aaKnown RBP11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 SLC7A2P52569 658 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 CTBP2P56545 445 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 CACNB2Q08289 660 aaPredicted RBP11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 USP4Q13107 963 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 PROSER3Q2NL68 480 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 SLC25A25Q6KCM7 469 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 PTAR1Q7Z6K3 402 aaPredicted RBP11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 IQCKQ8N0W5 287 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 TBL1YQ9BQ87 522 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 CBWD1Q9BRT8 395 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 OR2B2Q9GZK3 357 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 OSGEPQ9NPF4 335 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 WDR62O43379 1518 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 FADS2P1A8MWK0 482 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 FDPSP14324 419 aaKnown RBP11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 SLC6A2P23975 617 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 ECHS1P30084 290 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 LHX1P48742 406 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 TUFMP49411 452 aaKnown RBP11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 AFF1P51825 1210 aaKnown RBP11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 RHOAP61586 193 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 IRF8Q02556 426 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 GCNT7Q6ZNI0 430 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 ASCC1Q8N9N2 400 aaKnown RBP11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 ACE2Q9BYF1 805 aaPredicted RBP11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 RNF38Q9H0F5 515 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 NXF3Q9H4D5 531 aaKnown RBP11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 CDHR5Q9HBB8 845 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 TMEM184CQ9NVA4 438 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 NDUFAF4Q9P032 175 aa11.27□□□□□ -0.61
LIMCH1-208ENST00000508501 MAGED1Q9Y5V3 778 aaPredicted RBP11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms