RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 ATP8A1Q9Y2Q0 1164 aa18.71■□□□□ 0.59
COL7A1-209ENST00000474432 SHROOM3Q8TF72 1996 aa18.71■□□□□ 0.59
COL7A1-209ENST00000474432 H3BRJ5 948 aa18.7■□□□□ 0.58
COL7A1-209ENST00000474432 TOR1BO14657 336 aa18.7■□□□□ 0.58
COL7A1-209ENST00000474432 OPA1O60313 960 aa18.7■□□□□ 0.58
COL7A1-209ENST00000474432 MAFKO60675 156 aa18.7■□□□□ 0.58
COL7A1-209ENST00000474432 MT-CO3P00414 261 aa18.7■□□□□ 0.58
COL7A1-209ENST00000474432 ALPPL2P10696 532 aa18.7■□□□□ 0.58
COL7A1-209ENST00000474432 LIG3P49916 1009 aa18.7■□□□□ 0.58
COL7A1-209ENST00000474432 THOP1P52888 689 aa18.7■□□□□ 0.58
COL7A1-209ENST00000474432 TPM4P67936 248 aa18.7■□□□□ 0.58
COL7A1-209ENST00000474432 C1orf61Q13536 156 aa18.7■□□□□ 0.58
COL7A1-209ENST00000474432 LRRC14Q15048 493 aa18.7■□□□□ 0.58
COL7A1-209ENST00000474432 DEFB133Q30KQ1 61 aa18.7■□□□□ 0.58
COL7A1-209ENST00000474432 ZSCAN23Q3MJ62 389 aa18.7■□□□□ 0.58
COL7A1-209ENST00000474432 KCTD16Q68DU8 428 aa18.7■□□□□ 0.58
COL7A1-209ENST00000474432 ZCCHC8Q6NZY4 707 aaKnown RBP18.7■□□□□ 0.58
COL7A1-209ENST00000474432 MACC1Q6ZN28 852 aa18.7■□□□□ 0.58
COL7A1-209ENST00000474432 PHACTR4Q8IZ21 702 aa18.7■□□□□ 0.58
COL7A1-209ENST00000474432 FAM71BQ8TC56 605 aa18.7■□□□□ 0.58
COL7A1-209ENST00000474432 LMX1AQ8TE12 382 aa18.7■□□□□ 0.58
COL7A1-209ENST00000474432 TEKT4Q8WW24 435 aa18.7■□□□□ 0.58
COL7A1-209ENST00000474432 HSPH1Q92598 858 aa18.7■□□□□ 0.58
COL7A1-209ENST00000474432 FUBP1Q96AE4 644 aaKnown RBP18.7■□□□□ 0.58
COL7A1-209ENST00000474432 LRRC61Q9BV99 259 aa18.7■□□□□ 0.58
COL7A1-209ENST00000474432 DUSP23Q9BVJ7 150 aa18.7■□□□□ 0.58
COL7A1-209ENST00000474432 NUP85Q9BW27 656 aa18.7■□□□□ 0.58
COL7A1-209ENST00000474432 CINPQ9BW66 212 aaPredicted RBP18.7■□□□□ 0.58
COL7A1-209ENST00000474432 ATP13A3Q9H7F0 1226 aa18.7■□□□□ 0.58
COL7A1-209ENST00000474432 SALL4Q9UJQ4 1053 aa18.7■□□□□ 0.58
COL7A1-209ENST00000474432 LUC7L2Q9Y383 392 aaKnown RBP18.7■□□□□ 0.58
COL7A1-209ENST00000474432 A0A087WV48 116 aa18.69■□□□□ 0.58
COL7A1-209ENST00000474432 H3BM21 787 aa18.69■□□□□ 0.58
COL7A1-209ENST00000474432 TPP1O14773 563 aa18.69■□□□□ 0.58
COL7A1-209ENST00000474432 TLX3O43711 291 aaPredicted RBP18.69■□□□□ 0.58
COL7A1-209ENST00000474432 GP1BAP07359 652 aa18.69■□□□□ 0.58
COL7A1-209ENST00000474432 CELA2BP08218 269 aaPredicted RBP18.69■□□□□ 0.58
COL7A1-209ENST00000474432 XPAP23025 273 aaPredicted RBP18.69■□□□□ 0.58
COL7A1-209ENST00000474432 SERPINA4P29622 427 aa18.69■□□□□ 0.58
COL7A1-209ENST00000474432 HNRNPH3P31942 346 aaKnown RBP18.69■□□□□ 0.58
COL7A1-209ENST00000474432 CASP14P31944 242 aa18.69■□□□□ 0.58
COL7A1-209ENST00000474432 ARSEP51690 589 aa18.69■□□□□ 0.58
COL7A1-209ENST00000474432 PTK2BQ14289 1009 aa18.69■□□□□ 0.58
COL7A1-209ENST00000474432 LBRQ14739 615 aaKnown RBP18.69■□□□□ 0.58
COL7A1-209ENST00000474432 COL28A1Q2UY09 1125 aa18.69■□□□□ 0.58
COL7A1-209ENST00000474432 TMCO4Q5TGY1 634 aa18.69■□□□□ 0.58
COL7A1-209ENST00000474432 ALKBH5Q6P6C2 394 aaKnown RBP18.69■□□□□ 0.58
COL7A1-209ENST00000474432 PLA2G15Q8NCC3 412 aa18.69■□□□□ 0.58
COL7A1-209ENST00000474432 BTN2A2Q8WVV5 523 aa18.69■□□□□ 0.58
COL7A1-209ENST00000474432 SPOCK2Q92563 424 aa18.69■□□□□ 0.58
COL7A1-209ENST00000474432 NXPE2Q96DL1 559 aa18.69■□□□□ 0.58
COL7A1-209ENST00000474432 IQCDQ96DY2 449 aa18.69■□□□□ 0.58
COL7A1-209ENST00000474432 TBATAQ96M53 351 aa18.69■□□□□ 0.58
COL7A1-209ENST00000474432 ZNF599Q96NL3 588 aa18.69■□□□□ 0.58
COL7A1-209ENST00000474432 BOCQ9BWV1 1114 aa18.69■□□□□ 0.58
COL7A1-209ENST00000474432 C1QTNF7Q9BXJ2 289 aa18.69■□□□□ 0.58
COL7A1-209ENST00000474432 XPO4Q9C0E2 1151 aaKnown RBP18.69■□□□□ 0.58
COL7A1-209ENST00000474432 USP29Q9HBJ7 922 aa18.69■□□□□ 0.58
COL7A1-209ENST00000474432 SEPT3Q9UH03 358 aa18.69■□□□□ 0.58
COL7A1-209ENST00000474432 APOBEC3BQ9UH17 382 aaKnown RBP18.69■□□□□ 0.58
COL7A1-209ENST00000474432 IP6K2Q9UHH9 426 aa18.69■□□□□ 0.58
COL7A1-209ENST00000474432 ANAPC7Q9UJX3 599 aa18.69■□□□□ 0.58
COL7A1-209ENST00000474432 IGSF10Q6WRI0 2623 aa18.69■□□□□ 0.58
COL7A1-209ENST00000474432 CFAP69A5D8W1 941 aa18.68■□□□□ 0.58
COL7A1-209ENST00000474432 CASC3O15234 703 aaKnown RBP18.68■□□□□ 0.58
COL7A1-209ENST00000474432 CD48P09326 243 aa18.68■□□□□ 0.58
COL7A1-209ENST00000474432 HOXB3P14651 431 aaPredicted RBP18.68■□□□□ 0.58
COL7A1-209ENST00000474432 ARL4AP40617 200 aa18.68■□□□□ 0.58
COL7A1-209ENST00000474432 PEX5P50542 639 aa18.68■□□□□ 0.58
COL7A1-209ENST00000474432 SCNN1BP51168 640 aa18.68■□□□□ 0.58
COL7A1-209ENST00000474432 ADKP55263 362 aaKnown RBP18.68■□□□□ 0.58
COL7A1-209ENST00000474432 BCL2L1Q07817 233 aa18.68■□□□□ 0.58
COL7A1-209ENST00000474432 INPP5AQ14642 412 aa18.68■□□□□ 0.58
COL7A1-209ENST00000474432 ALG11Q2TAA5 492 aa18.68■□□□□ 0.58
COL7A1-209ENST00000474432 HS1BP3Q53T59 392 aa18.68■□□□□ 0.58
COL7A1-209ENST00000474432 PRRT3Q5FWE3 981 aa18.68■□□□□ 0.58
COL7A1-209ENST00000474432 ERAP2Q6P179 960 aa18.68■□□□□ 0.58
COL7A1-209ENST00000474432 GUSBP11Q6P575 273 aa18.68■□□□□ 0.58
COL7A1-209ENST00000474432 TMCO3Q6UWJ1 677 aa18.68■□□□□ 0.58
COL7A1-209ENST00000474432 LIPIQ6XZB0 460 aa18.68■□□□□ 0.58
COL7A1-209ENST00000474432 HNRNPLLQ8WVV9 542 aaKnown RBP18.68■□□□□ 0.58
COL7A1-209ENST00000474432 APOOQ9BUR5 198 aa18.68■□□□□ 0.58
COL7A1-209ENST00000474432 SCUBE2Q9NQ36 999 aa18.68■□□□□ 0.58
COL7A1-209ENST00000474432 SPASTQ9UBP0 616 aa18.68■□□□□ 0.58
COL7A1-209ENST00000474432 PCDHB1Q9Y5F3 818 aa18.68■□□□□ 0.58
COL7A1-209ENST00000474432 EME2A4GXA9 379 aaPredicted RBP18.67■□□□□ 0.58
COL7A1-209ENST00000474432 LMO7DNF2Z398 122 aa18.67■□□□□ 0.58
COL7A1-209ENST00000474432 GOLGA6L19H0YKK7 550 aa18.67■□□□□ 0.58
COL7A1-209ENST00000474432 YY2O15391 372 aa18.67■□□□□ 0.58
COL7A1-209ENST00000474432 HTRA2O43464 458 aaPredicted RBP18.67■□□□□ 0.58
COL7A1-209ENST00000474432 LZTS3O60299 673 aaPredicted RBP18.67■□□□□ 0.58
COL7A1-209ENST00000474432 TSHRP16473 764 aa18.67■□□□□ 0.58
COL7A1-209ENST00000474432 AP1S1P61966 158 aa18.67■□□□□ 0.58
COL7A1-209ENST00000474432 MMRN1Q13201 1228 aa18.67■□□□□ 0.58
COL7A1-209ENST00000474432 NFKBIBQ15653 356 aa18.67■□□□□ 0.58
COL7A1-209ENST00000474432 CDKN3Q16667 212 aa18.67■□□□□ 0.58
COL7A1-209ENST00000474432 ASTE1Q2TB18 679 aaPredicted RBP18.67■□□□□ 0.58
COL7A1-209ENST00000474432 ATP13A4Q4VNC1 1196 aa18.67■□□□□ 0.58
COL7A1-209ENST00000474432 CCDC122Q5T0U0 273 aa18.67■□□□□ 0.58
COL7A1-209ENST00000474432 DPPA4Q7L190 304 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms