RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 PLA2G2AP14555 144 aa16.23■□□□□ 0.19
COL7A1-204ENST00000462475 MMP12P39900 470 aa16.23■□□□□ 0.19
COL7A1-204ENST00000462475 RGRP47804 291 aa16.23■□□□□ 0.19
COL7A1-204ENST00000462475 LIG3P49916 1009 aa16.23■□□□□ 0.19
COL7A1-204ENST00000462475 BLKP51451 505 aa16.23■□□□□ 0.19
COL7A1-204ENST00000462475 AIF1P55008 147 aa16.23■□□□□ 0.19
COL7A1-204ENST00000462475 TPI1P60174 286 aa16.23■□□□□ 0.19
COL7A1-204ENST00000462475 UBXN1Q04323 297 aa16.23■□□□□ 0.19
COL7A1-204ENST00000462475 SPIDRQ14159 915 aa16.23■□□□□ 0.19
COL7A1-204ENST00000462475 INPP5AQ14642 412 aa16.23■□□□□ 0.19
COL7A1-204ENST00000462475 ELOCQ15369 112 aa16.23■□□□□ 0.19
COL7A1-204ENST00000462475 DCUN1D2Q6PH85 259 aa16.23■□□□□ 0.19
COL7A1-204ENST00000462475 APTXQ7Z2E3 356 aaKnown RBP16.23■□□□□ 0.19
COL7A1-204ENST00000462475 RD3Q7Z3Z2 195 aa16.23■□□□□ 0.19
COL7A1-204ENST00000462475 CAMK1DQ8IU85 385 aa16.23■□□□□ 0.19
COL7A1-204ENST00000462475 MCOLN2Q8IZK6 566 aa16.23■□□□□ 0.19
COL7A1-204ENST00000462475 WDR36Q8NI36 951 aaKnown RBP16.23■□□□□ 0.19
COL7A1-204ENST00000462475 WDR48Q8TAF3 677 aa16.23■□□□□ 0.19
COL7A1-204ENST00000462475 CCDC74AQ96AQ1 378 aa16.23■□□□□ 0.19
COL7A1-204ENST00000462475 EDEM3Q9BZQ6 932 aa16.23■□□□□ 0.19
COL7A1-204ENST00000462475 TAS2R14Q9NYV8 317 aa16.23■□□□□ 0.19
COL7A1-204ENST00000462475 SSUH2Q9Y2M2 353 aa16.23■□□□□ 0.19
COL7A1-204ENST00000462475 RASGRP1O95267 797 aa16.22■□□□□ 0.19
COL7A1-204ENST00000462475 CTSEP14091 401 aa16.22■□□□□ 0.19
COL7A1-204ENST00000462475 HTR1BP28222 390 aa16.22■□□□□ 0.19
COL7A1-204ENST00000462475 SRP54P61011 504 aaKnown RBP16.22■□□□□ 0.19
COL7A1-204ENST00000462475 MYL5Q02045 173 aa16.22■□□□□ 0.19
COL7A1-204ENST00000462475 RHDQ02161 417 aa16.22■□□□□ 0.19
COL7A1-204ENST00000462475 VAC14Q08AM6 782 aa16.22■□□□□ 0.19
COL7A1-204ENST00000462475 CA9Q16790 459 aa16.22■□□□□ 0.19
COL7A1-204ENST00000462475 CFAP58Q5T655 872 aa16.22■□□□□ 0.19
COL7A1-204ENST00000462475 ERAP2Q6P179 960 aa16.22■□□□□ 0.19
COL7A1-204ENST00000462475 BRAT1Q6PJG6 821 aa16.22■□□□□ 0.19
COL7A1-204ENST00000462475 ENPP7Q6UWV6 458 aa16.22■□□□□ 0.19
COL7A1-204ENST00000462475 B3GNT8Q7Z7M8 397 aa16.22■□□□□ 0.19
COL7A1-204ENST00000462475 HCAR2Q8TDS4 363 aa16.22■□□□□ 0.19
COL7A1-204ENST00000462475 PDXPQ96GD0 296 aa16.22■□□□□ 0.19
COL7A1-204ENST00000462475 ERGIC2Q96RQ1 377 aa16.22■□□□□ 0.19
COL7A1-204ENST00000462475 APOOQ9BUR5 198 aa16.22■□□□□ 0.19
COL7A1-204ENST00000462475 SLC39A8Q9C0K1 460 aa16.22■□□□□ 0.19
COL7A1-204ENST00000462475 KLQ9UEF7 1012 aa16.22■□□□□ 0.19
COL7A1-204ENST00000462475 GPR34Q9UPC5 381 aa16.22■□□□□ 0.19
COL7A1-204ENST00000462475 AP4E1Q9UPM8 1137 aa16.22■□□□□ 0.19
COL7A1-204ENST00000462475 ATP8A1Q9Y2Q0 1164 aa16.22■□□□□ 0.19
COL7A1-204ENST00000462475 CCDC187A0A096LP49 1063 aa16.21■□□□□ 0.19
COL7A1-204ENST00000462475 TMEM110-MUSTN1A8MSY1 372 aa16.21■□□□□ 0.19
COL7A1-204ENST00000462475 ATMINO43313 823 aaPredicted RBP16.21■□□□□ 0.19
COL7A1-204ENST00000462475 TNFSF15O95150 251 aa16.21■□□□□ 0.19
COL7A1-204ENST00000462475 ALPIP09923 528 aa16.21■□□□□ 0.19
COL7A1-204ENST00000462475 HTR7P34969 479 aa16.21■□□□□ 0.19
COL7A1-204ENST00000462475 PAPOLAP51003 745 aaKnown RBP16.21■□□□□ 0.19
COL7A1-204ENST00000462475 NDST2P52849 883 aa16.21■□□□□ 0.19
COL7A1-204ENST00000462475 RALGDSQ12967 914 aa16.21■□□□□ 0.19
COL7A1-204ENST00000462475 GRM3Q14832 879 aa16.21■□□□□ 0.19
COL7A1-204ENST00000462475 AGERQ15109 404 aa16.21■□□□□ 0.19
COL7A1-204ENST00000462475 ACAD10Q6JQN1 1059 aa16.21■□□□□ 0.19
COL7A1-204ENST00000462475 LVRNQ6Q4G3 990 aa16.21■□□□□ 0.19
COL7A1-204ENST00000462475 CLEC14AQ86T13 490 aa16.21■□□□□ 0.19
COL7A1-204ENST00000462475 SDR16C5Q8N3Y7 309 aa16.21■□□□□ 0.19
COL7A1-204ENST00000462475 ARL14Q8N4G2 192 aa16.21■□□□□ 0.19
COL7A1-204ENST00000462475 PLA2G15Q8NCC3 412 aa16.21■□□□□ 0.19
COL7A1-204ENST00000462475 TSEN2Q8NCE0 465 aaKnown RBP16.21■□□□□ 0.19
COL7A1-204ENST00000462475 ANKRD20A12PQ8NF67 263 aa16.21■□□□□ 0.19
COL7A1-204ENST00000462475 SNRNP27Q8WVK2 155 aaKnown RBP16.21■□□□□ 0.19
COL7A1-204ENST00000462475 TTC9Q92623 222 aa16.21■□□□□ 0.19
COL7A1-204ENST00000462475 ZNF641Q96N77 438 aaPredicted RBP16.21■□□□□ 0.19
COL7A1-204ENST00000462475 TUBGCP5Q96RT8 1024 aa16.21■□□□□ 0.19
COL7A1-204ENST00000462475 PEBP4Q96S96 227 aa16.21■□□□□ 0.19
COL7A1-204ENST00000462475 SYT11Q9BT88 431 aa16.21■□□□□ 0.19
COL7A1-204ENST00000462475 SEMA4CQ9C0C4 833 aa16.21■□□□□ 0.19
COL7A1-204ENST00000462475 HSD3B7Q9H2F3 369 aa16.21■□□□□ 0.19
COL7A1-204ENST00000462475 ASH1LQ9NR48 2969 aaKnown RBP16.21■□□□□ 0.19
COL7A1-204ENST00000462475 FLNBO75369 2602 aaKnown RBP16.2■□□□□ 0.18
COL7A1-204ENST00000462475 D6RAR5 112 aa16.2■□□□□ 0.18
COL7A1-204ENST00000462475 ITGA2BP08514 1039 aa16.2■□□□□ 0.18
COL7A1-204ENST00000462475 FERP16591 822 aa16.2■□□□□ 0.18
COL7A1-204ENST00000462475 PSMA2P25787 234 aa16.2■□□□□ 0.18
COL7A1-204ENST00000462475 CCL7P80098 99 aa16.2■□□□□ 0.18
COL7A1-204ENST00000462475 CLN3Q13286 438 aa16.2■□□□□ 0.18
COL7A1-204ENST00000462475 MAMLD1Q13495 774 aa16.2■□□□□ 0.18
COL7A1-204ENST00000462475 MTM1Q13496 603 aa16.2■□□□□ 0.18
COL7A1-204ENST00000462475 NCAPHQ15003 741 aa16.2■□□□□ 0.18
COL7A1-204ENST00000462475 ARHGAP36Q6ZRI8 547 aa16.2■□□□□ 0.18
COL7A1-204ENST00000462475 CLEC17AQ6ZS10 378 aa16.2■□□□□ 0.18
COL7A1-204ENST00000462475 ZNF605Q86T29 641 aa16.2■□□□□ 0.18
COL7A1-204ENST00000462475 SRLQ86TD4 932 aa16.2■□□□□ 0.18
COL7A1-204ENST00000462475 GKN2Q86XP6 184 aa16.2■□□□□ 0.18
COL7A1-204ENST00000462475 ARHGAP12Q8IWW6 846 aa16.2■□□□□ 0.18
COL7A1-204ENST00000462475 ARFGAP1Q8N6T3 406 aa16.2■□□□□ 0.18
COL7A1-204ENST00000462475 NPWQ8N729 165 aa16.2■□□□□ 0.18
COL7A1-204ENST00000462475 SCG3Q8WXD2 468 aaKnown RBP16.2■□□□□ 0.18
COL7A1-204ENST00000462475 OR1E3Q8WZA6 343 aa16.2■□□□□ 0.18
COL7A1-204ENST00000462475 LIN37Q96GY3 246 aaPredicted RBP16.2■□□□□ 0.18
COL7A1-204ENST00000462475 WDR92Q96MX6 357 aa16.2■□□□□ 0.18
COL7A1-204ENST00000462475 GFM1Q96RP9 751 aaKnown RBP16.2■□□□□ 0.18
COL7A1-204ENST00000462475 KCTD15Q96SI1 283 aaPredicted RBP16.2■□□□□ 0.18
COL7A1-204ENST00000462475 SNRNP25Q9BV90 132 aaKnown RBP16.2■□□□□ 0.18
COL7A1-204ENST00000462475 FOXP3Q9BZS1 431 aa16.2■□□□□ 0.18
COL7A1-204ENST00000462475 DHX35Q9H5Z1 703 aaKnown RBP16.2■□□□□ 0.18
COL7A1-204ENST00000462475 ATP13A3Q9H7F0 1226 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms