RNA–Protein interactions for RNA: ENST00000424804.6

VRK3-203, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,061 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-203ENST00000424804 HPCAL4Q9UM19 191 aa13.11□□□□□ -0.31
VRK3-203ENST00000424804 ENTPD2Q9Y5L3 495 aa13.11□□□□□ -0.31
VRK3-203ENST00000424804 ZNF462Q96JM2 2506 aa13.11□□□□□ -0.31
VRK3-203ENST00000424804 ANKRD36A6QL64 1941 aa13.1□□□□□ -0.31
VRK3-203ENST00000424804 TMEM110-MUSTN1A8MSY1 372 aa13.1□□□□□ -0.31
VRK3-203ENST00000424804 EEF2KO00418 725 aaKnown RBP13.1□□□□□ -0.31
VRK3-203ENST00000424804 BUB1O43683 1085 aa13.1□□□□□ -0.31
VRK3-203ENST00000424804 BUB1BO60566 1050 aaPredicted RBP13.1□□□□□ -0.31
VRK3-203ENST00000424804 CELA2BP08218 269 aaPredicted RBP13.1□□□□□ -0.31
VRK3-203ENST00000424804 DUSP3P51452 185 aaPredicted RBP13.1□□□□□ -0.31
VRK3-203ENST00000424804 PDX1P52945 283 aa13.1□□□□□ -0.31
VRK3-203ENST00000424804 AIF1P55008 147 aa13.1□□□□□ -0.31
VRK3-203ENST00000424804 GEMIN4P57678 1058 aaKnown RBP13.1□□□□□ -0.31
VRK3-203ENST00000424804 SMTNL2Q2TAL5 461 aa13.1□□□□□ -0.31
VRK3-203ENST00000424804 ERMARDQ5T6L9 678 aa13.1□□□□□ -0.31
VRK3-203ENST00000424804 KCTD16Q68DU8 428 aa13.1□□□□□ -0.31
VRK3-203ENST00000424804 IGF2-ASQ6U949 168 aa13.1□□□□□ -0.31
VRK3-203ENST00000424804 EFL1Q7Z2Z2 1120 aaKnown RBP13.1□□□□□ -0.31
VRK3-203ENST00000424804 TTC7BQ86TV6 843 aa13.1□□□□□ -0.31
VRK3-203ENST00000424804 ZSWIM9Q86XI8 627 aa13.1□□□□□ -0.31
VRK3-203ENST00000424804 CNGA4Q8IV77 575 aa13.1□□□□□ -0.31
VRK3-203ENST00000424804 SLC35F3Q8IY50 421 aa13.1□□□□□ -0.31
VRK3-203ENST00000424804 UMODL1-AS1Q8N2C9 162 aa13.1□□□□□ -0.31
VRK3-203ENST00000424804 RYBPQ8N488 228 aaPredicted RBP13.1□□□□□ -0.31
VRK3-203ENST00000424804 ARFGAP1Q8N6T3 406 aa13.1□□□□□ -0.31
VRK3-203ENST00000424804 MAPK15Q8TD08 544 aa13.1□□□□□ -0.31
VRK3-203ENST00000424804 CTNNBL1Q8WYA6 563 aaPredicted RBP13.1□□□□□ -0.31
VRK3-203ENST00000424804 HSPH1Q92598 858 aa13.1□□□□□ -0.31
VRK3-203ENST00000424804 TBATAQ96M53 351 aa13.1□□□□□ -0.31
VRK3-203ENST00000424804 CCDC42Q96M95 316 aa13.1□□□□□ -0.31
VRK3-203ENST00000424804 DEPDC7Q96QD5 511 aa13.1□□□□□ -0.31
VRK3-203ENST00000424804 KCTD15Q96SI1 283 aaPredicted RBP13.1□□□□□ -0.31
VRK3-203ENST00000424804 DNAJC7Q99615 494 aa13.1□□□□□ -0.31
VRK3-203ENST00000424804 LRRC61Q9BV99 259 aa13.1□□□□□ -0.31
VRK3-203ENST00000424804 OSBPL1AQ9BXW6 950 aa13.1□□□□□ -0.31
VRK3-203ENST00000424804 PACSIN1Q9BY11 444 aa13.1□□□□□ -0.31
VRK3-203ENST00000424804 CPEB1Q9BZB8 566 aaKnown RBP13.1□□□□□ -0.31
VRK3-203ENST00000424804 LRRC19Q9H756 370 aa13.1□□□□□ -0.31
VRK3-203ENST00000424804 CATSPERBQ9H7T0 1116 aa13.1□□□□□ -0.31
VRK3-203ENST00000424804 POLR1BQ9H9Y6 1135 aa13.1□□□□□ -0.31
VRK3-203ENST00000424804 SPTLC3Q9NUV7 552 aa13.1□□□□□ -0.31
VRK3-203ENST00000424804 SETXQ7Z333 2677 aaKnown RBP13.1□□□□□ -0.31
VRK3-203ENST00000424804 COL6A6A6NMZ7 2263 aa13.09□□□□□ -0.31
VRK3-203ENST00000424804 TSPAN11A1L157 253 aa13.09□□□□□ -0.31
VRK3-203ENST00000424804 CPED1A4D0V7 1026 aa13.09□□□□□ -0.31
VRK3-203ENST00000424804 RASA4BC9J798 803 aa13.09□□□□□ -0.31
VRK3-203ENST00000424804 LMO7DNF2Z398 122 aa13.09□□□□□ -0.31
VRK3-203ENST00000424804 YY2O15391 372 aa13.09□□□□□ -0.31
VRK3-203ENST00000424804 RASA4O43374 803 aa13.09□□□□□ -0.31
VRK3-203ENST00000424804 LRCH4O75427 683 aa13.09□□□□□ -0.31
VRK3-203ENST00000424804 HNRNPH3P31942 346 aaKnown RBP13.09□□□□□ -0.31
VRK3-203ENST00000424804 RGRP47804 291 aa13.09□□□□□ -0.31
VRK3-203ENST00000424804 YBEYP58557 167 aaPredicted RBP13.09□□□□□ -0.31
VRK3-203ENST00000424804 YPEL5P62699 121 aa13.09□□□□□ -0.31
VRK3-203ENST00000424804 GABREP78334 506 aa13.09□□□□□ -0.31
VRK3-203ENST00000424804 SLC18A3Q16572 532 aa13.09□□□□□ -0.31
VRK3-203ENST00000424804 WSCD2Q2TBF2 565 aa13.09□□□□□ -0.31
VRK3-203ENST00000424804 HS1BP3Q53T59 392 aa13.09□□□□□ -0.31
VRK3-203ENST00000424804 SARM1Q6SZW1 724 aa13.09□□□□□ -0.31
VRK3-203ENST00000424804 GPR155Q7Z3F1 870 aa13.09□□□□□ -0.31
VRK3-203ENST00000424804 GAS2L3Q86XJ1 694 aa13.09□□□□□ -0.31
VRK3-203ENST00000424804 PHACTR4Q8IZ21 702 aa13.09□□□□□ -0.31
VRK3-203ENST00000424804 LSM14AQ8ND56 463 aaKnown RBP13.09□□□□□ -0.31
VRK3-203ENST00000424804 ZNF564Q8TBZ8 553 aaPredicted RBP13.09□□□□□ -0.31
VRK3-203ENST00000424804 FNIP1Q8TF40 1166 aa13.09□□□□□ -0.31
VRK3-203ENST00000424804 CASKIN2Q8WXE0 1202 aa13.09□□□□□ -0.31
VRK3-203ENST00000424804 CELF6Q96J87 481 aaKnown RBP13.09□□□□□ -0.31
VRK3-203ENST00000424804 NHEJ1Q9H9Q4 299 aaPredicted RBP13.09□□□□□ -0.31
VRK3-203ENST00000424804 IP6K2Q9UHH9 426 aa13.09□□□□□ -0.31
VRK3-203ENST00000424804 IPO11Q9UI26 975 aaKnown RBP13.09□□□□□ -0.31
VRK3-203ENST00000424804 COQ6Q9Y2Z9 468 aa13.09□□□□□ -0.31
VRK3-203ENST00000424804 UNC13CQ8NB66 2214 aa13.09□□□□□ -0.31
VRK3-203ENST00000424804 BSNQ9UPA5 3926 aa13.08□□□□□ -0.31
VRK3-203ENST00000424804 ARHGEF17Q96PE2 2063 aaPredicted RBP13.08□□□□□ -0.32
VRK3-203ENST00000424804 ZSCAN5CA6NGD5 496 aaPredicted RBP13.08□□□□□ -0.32
VRK3-203ENST00000424804 H3BM21 787 aa13.08□□□□□ -0.32
VRK3-203ENST00000424804 J3KR12 359 aa13.08□□□□□ -0.32
VRK3-203ENST00000424804 MYO1FO00160 1098 aa13.08□□□□□ -0.32
VRK3-203ENST00000424804 NTN3O00634 580 aaPredicted RBP13.08□□□□□ -0.32
VRK3-203ENST00000424804 TM7SF2O76062 418 aa13.08□□□□□ -0.32
VRK3-203ENST00000424804 PIGNO95427 931 aa13.08□□□□□ -0.32
VRK3-203ENST00000424804 CYP1A2P05177 515 aa13.08□□□□□ -0.32
VRK3-203ENST00000424804 H2AFZP0C0S5 128 aa13.08□□□□□ -0.32
VRK3-203ENST00000424804 TCF4P15884 667 aa13.08□□□□□ -0.32
VRK3-203ENST00000424804 TSHRP16473 764 aa13.08□□□□□ -0.32
VRK3-203ENST00000424804 GM2AP17900 193 aa13.08□□□□□ -0.32
VRK3-203ENST00000424804 ZNF75DP51815 510 aa13.08□□□□□ -0.32
VRK3-203ENST00000424804 ERVPABLB-1P60509 514 aa13.08□□□□□ -0.32
VRK3-203ENST00000424804 PIGHQ14442 188 aaPredicted RBP13.08□□□□□ -0.32
VRK3-203ENST00000424804 AGERQ15109 404 aa13.08□□□□□ -0.32
VRK3-203ENST00000424804 IRF4Q15306 451 aa13.08□□□□□ -0.32
VRK3-203ENST00000424804 PRRT3Q5FWE3 981 aa13.08□□□□□ -0.32
VRK3-203ENST00000424804 C6orf132Q5T0Z8 1188 aa13.08□□□□□ -0.32
VRK3-203ENST00000424804 ZFYVE27Q5T4F4 411 aa13.08□□□□□ -0.32
VRK3-203ENST00000424804 CRTC1Q6UUV9 634 aa13.08□□□□□ -0.32
VRK3-203ENST00000424804 MACC1Q6ZN28 852 aa13.08□□□□□ -0.32
VRK3-203ENST00000424804 CYP4V2Q6ZWL3 525 aaPredicted RBP13.08□□□□□ -0.32
VRK3-203ENST00000424804 H2AFVQ71UI9 128 aa13.08□□□□□ -0.32
VRK3-203ENST00000424804 LSMEM2Q8N112 164 aa13.08□□□□□ -0.32
VRK3-203ENST00000424804 ZNF843Q8N446 348 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms