RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 TMEM214Q6NUQ4 689 aaKnown RBP10.77□□□□□ -0.69
USP54-204ENST00000422491 ZDHHC17Q8IUH5 632 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 CEP97Q8IW35 865 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 MFSD6LQ8IWD5 586 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 SPATA6LQ8N4H0 392 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 ZC3H15Q8WU90 426 aaKnown RBP10.77□□□□□ -0.69
USP54-204ENST00000422491 FAR2Q96K12 515 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 LHPPQ9H008 270 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 MRPL46Q9H2W6 279 aaKnown RBP10.77□□□□□ -0.69
USP54-204ENST00000422491 TPK1Q9H3S4 243 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 RAD21L1Q9H4I0 556 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 NRBP2Q9NSY0 501 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 EGFL7Q9UHF1 273 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 MAGED2Q9UNF1 606 aaPredicted RBP10.77□□□□□ -0.69
USP54-204ENST00000422491 ZNF638Q14966 1978 aaKnown RBP10.77□□□□□ -0.69
USP54-204ENST00000422491 NEMP2A6NFY4 417 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 PFDN6O15212 129 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 RAD17O75943 681 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 BFSP2Q13515 415 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 ZNF846Q147U1 533 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 CYHR1Q6ZMK1 362 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 TRPV3Q8NET8 790 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 HPS1Q92902 700 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 SNX25Q9H3E2 840 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 MRM3Q9HC36 420 aaKnown RBP10.77□□□□□ -0.69
USP54-204ENST00000422491 ACTR3BQ9P1U1 418 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 MAP10Q9P2G4 905 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 KLHL8Q9P2G9 620 aaPredicted RBP10.77□□□□□ -0.69
USP54-204ENST00000422491 FZD10Q9ULW2 581 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 ST14Q9Y5Y6 855 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 TLL2Q9Y6L7 1015 aa10.77□□□□□ -0.69
USP54-204ENST00000422491 MAGEB16A2A368 324 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 H0Y858 1186 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 GPC4O75487 556 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 AHSGP02765 367 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 PTPN3P26045 913 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 YWHAQP27348 245 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 ELK4P28324 431 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 RFC2P35250 354 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 GSSP48637 474 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 RAB10P61026 200 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 YBX1P67809 324 aaKnown RBP10.76□□□□□ -0.69
USP54-204ENST00000422491 BNIP2Q12982 314 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 AQP6Q13520 282 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 SPCS2Q15005 226 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 NANOGNBQ7Z5D8 188 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 NT5DC4Q86YG4 428 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 MINDY2Q8NBR6 621 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 REPS2Q8NFH8 660 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 MAGEE2Q8TD90 523 aaPredicted RBP10.76□□□□□ -0.69
USP54-204ENST00000422491 PTCD2Q8WV60 388 aaKnown RBP10.76□□□□□ -0.69
USP54-204ENST00000422491 FKBP10Q96AY3 582 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 CTRCQ99895 268 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 MLPHQ9BV36 600 aaPredicted RBP10.76□□□□□ -0.69
USP54-204ENST00000422491 FZD8Q9H461 694 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 SMARCAD1Q9H4L7 1026 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 AKIP1Q9NQ31 210 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 TLR9Q9NR96 1032 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 NSMCE4AQ9NXX6 385 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 THSD7AQ9UPZ6 1657 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 COL11A1P12107 1806 aaPredicted RBP10.76□□□□□ -0.69
USP54-204ENST00000422491 FXYD1O00168 92 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 LSM1O15116 133 aaKnown RBP10.76□□□□□ -0.69
USP54-204ENST00000422491 SYNCRIPO60506 623 aaKnown RBP10.76□□□□□ -0.69
USP54-204ENST00000422491 UGT2B4P06133 528 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 GFAPP14136 432 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 CYP2B6P20813 491 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 TGM1P22735 817 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 ATP5F1P24539 256 aaPredicted RBP10.76□□□□□ -0.69
USP54-204ENST00000422491 ICAM3P32942 547 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 ATP4BP51164 291 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 PLA2G16P53816 162 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 IFITM3Q01628 133 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 MXD4Q14582 209 aaPredicted RBP10.76□□□□□ -0.69
USP54-204ENST00000422491 PAFAH1B3Q15102 231 aaKnown RBP10.76□□□□□ -0.69
USP54-204ENST00000422491 CLPPQ16740 277 aaPredicted RBP10.76□□□□□ -0.69
USP54-204ENST00000422491 PERM1Q5SV97 790 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 BROXQ5VW32 411 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 FAM219BQ5XKK7 198 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 FAM131BQ86XD5 332 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 SFRP1Q8N474 314 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 LRRC71Q8N4P6 559 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 RNF139Q8WU17 664 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 MRPL57Q9BQC6 102 aaKnown RBP10.76□□□□□ -0.69
USP54-204ENST00000422491 HERC2P3Q9BVR0 1158 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 C2orf40Q9H1Z8 148 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 ZNF639Q9UID6 485 aa10.76□□□□□ -0.69
USP54-204ENST00000422491 RBMX2Q9Y388 322 aaKnown RBP10.76□□□□□ -0.69
USP54-204ENST00000422491 DYTNA2CJ06 578 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 BBIP1A8MTZ0 92 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 H0YAE9 185 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 ARPC2O15144 300 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 ABCB7O75027 752 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 RSL1D1O76021 490 aaKnown RBP10.75□□□□□ -0.69
USP54-204ENST00000422491 GPIP06744 558 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 ALOX5P09917 674 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 FCGR1AP12314 374 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 GPX3P22352 226 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 CD68P34810 354 aaPredicted RBP10.75□□□□□ -0.69
USP54-204ENST00000422491 NPY2RP49146 381 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms