RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 IGFL4Q6B9Z1 124 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 ABLIM2Q6H8Q1 611 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 FAM71BQ8TC56 605 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 MMTAG2Q9BU76 263 aaKnown RBP6.74□□□□□ -1.33
USP40-202ENST00000409945 ACTRT3Q9BYD9 372 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 TPSD1Q9BZJ3 242 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 SLC25A32Q9H2D1 315 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 CUEDC2Q9H467 287 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 SLC38A7Q9NVC3 462 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 ANKFY1Q9P2R3 1169 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 SEL1LQ9UBV2 794 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 EXOC7Q9UPT5 735 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 TNFSF13BQ9Y275 285 aa6.74□□□□□ -1.33
USP40-202ENST00000409945 ZAR1LA6NP61 321 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 K7ENM7 598 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 HNRNPDLO14979 420 aaKnown RBP6.73□□□□□ -1.33
USP40-202ENST00000409945 SLC16A4O15374 487 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 CLDN3O15551 220 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 B4GALT5O43286 388 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 TRAPPC3O43617 180 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 RGS10O43665 173 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 FOXD2O60548 495 aaPredicted RBP6.73□□□□□ -1.33
USP40-202ENST00000409945 TLR5O60602 858 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 TOM1L1O75674 476 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 URODP06132 367 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 MCF2P10911 925 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 NRIP1P48552 1158 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 LIG4P49917 911 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 CLCN2P51788 898 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 ELAVL2Q12926 359 aaKnown RBP6.73□□□□□ -1.33
USP40-202ENST00000409945 ALCAMQ13740 583 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 MAPKAPK3Q16644 382 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 HS1BP3Q53T59 392 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 PLPP4Q5VZY2 271 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 PDXDC1Q6P996 788 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 VPS52Q8N1B4 723 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 SLC39A11Q8N1S5 342 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 IQUBQ8NA54 791 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 IGSF21Q96ID5 467 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 UROC1Q96N76 676 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 USP28Q96RU2 1077 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 GAD1Q99259 594 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 NTPCRQ9BSD7 190 aaKnown RBP6.73□□□□□ -1.33
USP40-202ENST00000409945 EIF2AQ9BY44 585 aaKnown RBP6.73□□□□□ -1.33
USP40-202ENST00000409945 NXF3Q9H4D5 531 aaKnown RBP6.73□□□□□ -1.33
USP40-202ENST00000409945 PDZD7Q9H5P4 517 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 NRDE2Q9H7Z3 1164 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 MAGEF1Q9HAY2 307 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 MRPL17Q9NRX2 175 aaKnown RBP6.73□□□□□ -1.33
USP40-202ENST00000409945 DKK3Q9UBP4 350 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 FBXO2Q9UK22 296 aaPredicted RBP6.73□□□□□ -1.33
USP40-202ENST00000409945 PAXBP1Q9Y5B6 917 aa6.73□□□□□ -1.33
USP40-202ENST00000409945 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.72□□□□□ -1.33
USP40-202ENST00000409945 E7ENX8 843 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 SYT5O00445 386 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 CD3EAPO15446 510 aaKnown RBP6.72□□□□□ -1.33
USP40-202ENST00000409945 TADA2AO75478 443 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 CXCL14O95715 111 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 GALTP07902 379 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 HTR7P34969 479 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 TAP2Q03519 686 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 RAPGEF1Q13905 1077 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 HLXQ14774 488 aaPredicted RBP6.72□□□□□ -1.33
USP40-202ENST00000409945 PTPAQ15257 358 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 ZRSR2Q15696 482 aaKnown RBP6.72□□□□□ -1.33
USP40-202ENST00000409945 INSCQ1MX18 579 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 SLC5A9Q2M3M2 681 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 LEXMQ3ZCV2 418 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 L1TD1Q5T7N2 865 aaKnown RBP6.72□□□□□ -1.33
USP40-202ENST00000409945 HAUS6Q7Z4H7 955 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 RBM23Q86U06 439 aaKnown RBP6.72□□□□□ -1.33
USP40-202ENST00000409945 CCDC65Q8IXS2 484 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 SLC15A3Q8IY34 581 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 C11orf44Q8N8P7 122 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 LINC00301Q8NCQ3 95 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 CXorf38Q8TB03 319 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 IPCEF1Q8WWN9 437 aaPredicted RBP6.72□□□□□ -1.33
USP40-202ENST00000409945 CASP10Q92851 521 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 HVCN1Q96D96 273 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 EPSTI1Q96J88 318 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 MOGAT1Q96PD6 335 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 REEP2Q9BRK0 252 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 TMEM120AQ9BXJ8 343 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 GDAQ9Y2T3 454 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 HS3ST4Q9Y661 456 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 MYH11P35749 1972 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 SF3B1O75533 1304 aaKnown RBP eCLIP6.72□□□□□ -1.33
USP40-202ENST00000409945 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP6.72□□□□□ -1.33
USP40-202ENST00000409945 GOLGA6L4A6NEF3 574 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 M0R3H8 397 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 INPPL1O15357 1258 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 DHHO43323 396 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 LINC00271P0C7V0 271 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 IDEP14735 1019 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 ZNF20P17024 532 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 HOXB8P17481 243 aaPredicted RBP6.72□□□□□ -1.33
USP40-202ENST00000409945 PTK2BQ14289 1009 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 EEF1AKMT2Q5JPI9 291 aaKnown RBP6.72□□□□□ -1.33
USP40-202ENST00000409945 SPECC1Q5M775 1068 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 SLC9A4Q6AI14 798 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms