RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 EHD1Q9H4M9 534 aa7.35□□□□□ -1.23
SCN9A-202ENST00000409435 LDAHQ9H6V9 325 aa7.35□□□□□ -1.23
SCN9A-202ENST00000409435 NHEJ1Q9H9Q4 299 aaPredicted RBP7.35□□□□□ -1.23
SCN9A-202ENST00000409435 H2AFY2Q9P0M6 372 aaPredicted RBP7.35□□□□□ -1.23
SCN9A-202ENST00000409435 COPG2Q9UBF2 871 aa7.35□□□□□ -1.23
SCN9A-202ENST00000409435 MLXQ9UH92 298 aa7.35□□□□□ -1.23
SCN9A-202ENST00000409435 VAV3Q9UKW4 847 aa7.35□□□□□ -1.23
SCN9A-202ENST00000409435 PPIEQ9UNP9 301 aaKnown RBP7.35□□□□□ -1.23
SCN9A-202ENST00000409435 LRRC37A3O60309 1634 aa7.35□□□□□ -1.23
SCN9A-202ENST00000409435 CYP3A7-CYP3A51PA0A087WV96 503 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 VEGFDO43915 354 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 JCHAINP01591 159 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 CD72P21854 359 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 CYP3A7P24462 503 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 SOAT1P35610 550 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 MLLT3P42568 568 aaPredicted RBP7.34□□□□□ -1.23
SCN9A-202ENST00000409435 ECT2LQ008S8 904 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 SMTNL2Q2TAL5 461 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 CENPPQ6IPU0 288 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 C4orf22Q6V702 233 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 KDM7AQ6ZMT4 941 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 WDR36Q8NI36 951 aaKnown RBP7.34□□□□□ -1.23
SCN9A-202ENST00000409435 C12orf4Q9NQ89 552 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 C20orf96Q9NUD7 363 aaPredicted RBP7.34□□□□□ -1.23
SCN9A-202ENST00000409435 GGA2Q9UJY4 613 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 GPR34Q9UPC5 381 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 PCDHGA4Q9Y5G9 962 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 C1orf232A0A0U1RR37 186 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 VPS4BO75351 444 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 SKAP2O75563 359 aaPredicted RBP7.34□□□□□ -1.23
SCN9A-202ENST00000409435 STAU1O95793 577 aaKnown RBP7.34□□□□□ -1.23
SCN9A-202ENST00000409435 IL6P05231 212 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 ENO1P06733 434 aaKnown RBP7.34□□□□□ -1.23
SCN9A-202ENST00000409435 TYRP14679 529 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 CACNA2D1P54289 1103 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 KRT31Q15323 416 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 NR0B2Q15466 257 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 SMAD1Q15797 465 aaKnown RBP7.34□□□□□ -1.23
SCN9A-202ENST00000409435 SV2AQ7L0J3 742 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 CMTM8Q8IZV2 173 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 DGCR14Q96DF8 476 aaKnown RBP7.34□□□□□ -1.23
SCN9A-202ENST00000409435 TRIT1Q9H3H1 467 aaKnown RBP7.34□□□□□ -1.23
SCN9A-202ENST00000409435 SERHL2Q9H4I8 314 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 SERHLQ9NQF3 203 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 SUCOQ9UBS9 1254 aaKnown RBP7.34□□□□□ -1.23
SCN9A-202ENST00000409435 PLCL2Q9UPR0 1127 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 SPEF1Q9Y4P9 236 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 ANKRD26Q9UPS8 1709 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 OR10H2O60403 315 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 GLP2RO95838 553 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 TNFRSF4P43489 277 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 AVPR1BP47901 424 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 CUL4AQ13619 759 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 ITGA9Q13797 1035 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 PLA2G4EQ3MJ16 856 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 CYP20A1Q6UW02 462 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 DET1Q7L5Y6 550 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 TAS1R2Q8TE23 839 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 EDEM2Q9BV94 578 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 CARS2Q9HA77 564 aaKnown RBP7.34□□□□□ -1.23
SCN9A-202ENST00000409435 PDE7BQ9NP56 450 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 HEBP1Q9NRV9 189 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 COL20A1Q9P218 1284 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 CDC14AQ9UNH5 594 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 NUMBLQ9Y6R0 609 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 LRRC14BA6NHZ5 514 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 YKT6O15498 198 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 IRAK2O43187 625 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 CYTH3O43739 400 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 CCNE2O96020 404 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 TACR2P21452 398 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 ACTR1BP42025 376 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 CCT8P50990 548 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 ACTR1AP61163 376 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 DDX39BQ13838 428 aaKnown RBP7.34□□□□□ -1.23
SCN9A-202ENST00000409435 C15orf59Q2T9L4 293 aaPredicted RBP7.34□□□□□ -1.23
SCN9A-202ENST00000409435 COBLL1Q53SF7 1204 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 IZUMO3Q5VZ72 239 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 TRIM74Q86UV6 250 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 TRIM73Q86UV7 250 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 SIDT2Q8NBJ9 832 aaKnown RBP7.34□□□□□ -1.23
SCN9A-202ENST00000409435 VPS37AQ8NEZ2 397 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 CLHC1Q8NHS4 586 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 EMID1Q96A84 441 aaPredicted RBP7.34□□□□□ -1.23
SCN9A-202ENST00000409435 PLEKHA8Q96JA3 519 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 SEC16BQ96JE7 1060 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 MAGED4Q96JG8 741 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 HDHD2Q9H0R4 259 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 PAK6Q9NQU5 681 aaPredicted RBP7.34□□□□□ -1.23
SCN9A-202ENST00000409435 PFDN2Q9UHV9 154 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 AGO1Q9UL18 857 aaKnown RBP7.34□□□□□ -1.23
SCN9A-202ENST00000409435 HCN2Q9UL51 889 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 RABL2BQ9UNT1 228 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 PCDHA13Q9Y5I0 950 aa7.34□□□□□ -1.23
SCN9A-202ENST00000409435 CASKO14936 926 aa7.34□□□□□ -1.24
SCN9A-202ENST00000409435 MDM4O15151 490 aa7.34□□□□□ -1.24
SCN9A-202ENST00000409435 ZBTB14O43829 449 aa7.34□□□□□ -1.24
SCN9A-202ENST00000409435 PLEKP08567 350 aaPredicted RBP7.34□□□□□ -1.24
SCN9A-202ENST00000409435 ATP12AP54707 1039 aa7.34□□□□□ -1.24
SCN9A-202ENST00000409435 DUOXA1Q1HG43 343 aa7.34□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms