RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 POM121L1PQ3SYA9 428 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 TIGD7Q6NT04 549 aaPredicted RBP9.32□□□□□ -0.92
VPS53-203ENST00000401468 RETSATQ6NUM9 610 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 MARCH9Q86YJ5 346 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 MINDY1Q8N5J2 469 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 ATPAF2Q8N5M1 289 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 PRELID2Q8N945 189 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 RNF217Q8TC41 542 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 UCMAQ8WVF2 138 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 RTP4Q96DX8 246 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 MS4A14Q96JA4 679 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 RPL10LQ96L21 214 aaKnown RBP9.32□□□□□ -0.92
VPS53-203ENST00000401468 PSKH2Q96QS6 385 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 NAP1L3Q99457 506 aaPredicted RBP9.32□□□□□ -0.92
VPS53-203ENST00000401468 IL12RB2Q99665 862 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 NUSAP1Q9BXS6 441 aaKnown RBP9.32□□□□□ -0.92
VPS53-203ENST00000401468 C6orf106Q9H6K1 298 aaPredicted RBP9.32□□□□□ -0.92
VPS53-203ENST00000401468 USP29Q9HBJ7 922 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 EIF2B4Q9UI10 523 aaKnown RBP9.32□□□□□ -0.92
VPS53-203ENST00000401468 HPCAL4Q9UM19 191 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 PCDHB9Q9Y5E1 797 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 HEY1Q9Y5J3 304 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 KIF26BQ2KJY2 2108 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 SCN8AQ9UQD0 1980 aa9.32□□□□□ -0.92
VPS53-203ENST00000401468 DSPP15924 2871 aaKnown RBP9.31□□□□□ -0.92
VPS53-203ENST00000401468 TARSL2A2RTX5 802 aaKnown RBP9.31□□□□□ -0.92
VPS53-203ENST00000401468 CDC14CA4D256 554 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 CBX4O00257 560 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 DFFAO00273 331 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 MTSS1O43312 755 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 SMAD6O43541 496 aaKnown RBP9.31□□□□□ -0.92
VPS53-203ENST00000401468 LIASO43766 372 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 ITGAVP06756 1048 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 VAV1P15498 845 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 CD6P30203 668 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 CSNK1DP48730 415 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 METAP1P53582 386 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 IL9RQ01113 521 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 NSUN2Q08J23 767 aaKnown RBP eCLIP9.31□□□□□ -0.92
VPS53-203ENST00000401468 WASHC5Q12768 1159 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 CAMK2GQ13555 558 aaPredicted RBP9.31□□□□□ -0.92
VPS53-203ENST00000401468 TUBB2AQ13885 445 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 LLGL1Q15334 1064 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 CYTH1Q15438 398 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 HNRNPA1L2Q32P51 320 aaKnown RBP9.31□□□□□ -0.92
VPS53-203ENST00000401468 SLC45A4Q5BKX6 768 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 KLHDC8BQ8IXV7 354 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 CCDC13Q8IYE1 715 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 PNPLA1Q8N8W4 532 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 NETO2Q8NC67 525 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 TFB1MQ8WVM0 346 aaKnown RBP9.31□□□□□ -0.92
VPS53-203ENST00000401468 SLCO2A1Q92959 643 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 SIPA1Q96FS4 1042 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 LGMNQ99538 433 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 MGME1Q9BQP7 344 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 TUBB2BQ9BVA1 445 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 CAAP1Q9H8G2 361 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 HOMER3Q9NSC5 361 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 LHX3Q9UBR4 397 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 SERGEFQ9UGK8 458 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 SLCO3A1Q9UIG8 710 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 SLC25A13Q9UJS0 675 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 CDC23Q9UJX2 597 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 DRG1Q9Y295 367 aaKnown RBP9.31□□□□□ -0.92
VPS53-203ENST00000401468 ATP8A1Q9Y2Q0 1164 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 ADAMTS20P59510 1910 aa9.31□□□□□ -0.92
VPS53-203ENST00000401468 ZNF106Q9H2Y7 1883 aaKnown RBP9.3□□□□□ -0.92
VPS53-203ENST00000401468 CFAP69A5D8W1 941 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 TTC34A8MYJ7 566 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 K7ERQ8 282 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 PDE2AO00408 941 aaPredicted RBP9.3□□□□□ -0.92
VPS53-203ENST00000401468 MCF2LO15068 1137 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 ALOX15BO15296 676 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 HYAL3O43820 417 aaPredicted RBP9.3□□□□□ -0.92
VPS53-203ENST00000401468 TMCC1O94876 653 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 MAP3K6O95382 1288 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 GSRP00390 522 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 RBP3P10745 1247 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 CCNB1P14635 433 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 CR2P20023 1033 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 PMLP29590 882 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 HSPA9P38646 679 aaKnown RBP9.3□□□□□ -0.92
VPS53-203ENST00000401468 PTGIRP43119 386 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 CSNK1EP49674 416 aaKnown RBP9.3□□□□□ -0.92
VPS53-203ENST00000401468 RENBPP51606 427 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 ATXN3P54252 364 aaPredicted RBP9.3□□□□□ -0.92
VPS53-203ENST00000401468 EIF3EP60228 445 aaKnown RBP9.3□□□□□ -0.92
VPS53-203ENST00000401468 BNC1Q01954 994 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 SLC10A7Q0GE19 358 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 ZBTB17Q13105 803 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 BYSLQ13895 437 aaKnown RBP9.3□□□□□ -0.92
VPS53-203ENST00000401468 LBRQ14739 615 aaKnown RBP9.3□□□□□ -0.92
VPS53-203ENST00000401468 SLC14A2Q15849 920 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 DUOXA1Q1HG43 343 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 LONRF2Q1L5Z9 754 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 CCDC157Q569K6 752 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 RALGPS1Q5JS13 557 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 PRAMEF14Q5SWL7 426 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 C9orf64Q5T6V5 341 aa9.3□□□□□ -0.92
VPS53-203ENST00000401468 C22orf39Q6P5X5 142 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms