RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 SH3PXD2AQ5TCZ1 1133 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 ZNF773Q6PK81 442 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 PLEKHG7Q6ZR37 379 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 PODNQ7Z5L7 613 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 CAMKK1Q8N5S9 505 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 FNDC5Q8NAU1 212 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 GALNT6Q8NCL4 622 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 OR8H1Q8NGG4 311 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 TMEM176AQ96HP8 235 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 HPDLQ96IR7 371 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 SLC4A9Q96Q91 983 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 TTYH2Q9BSA4 534 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 RMND5AQ9H871 391 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 PAQR5Q9NXK6 330 aaPredicted RBP9.36□□□□□ -0.91
COL28A1-201ENST00000399429 ZNF224Q9NZL3 707 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 SPATA2Q9UM82 520 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 IFT52Q9Y366 437 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 MRPL42Q9Y6G3 142 aaKnown RBP9.36□□□□□ -0.91
COL28A1-201ENST00000399429 A0A087WZ62 844 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 NEMP2A6NFY4 417 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 ZNF99A8MXY4 864 aaPredicted RBP9.36□□□□□ -0.91
COL28A1-201ENST00000399429 PLOD2O00469 737 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 ZW10O43264 779 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 GTF2E2P29084 291 aaKnown RBP9.36□□□□□ -0.91
COL28A1-201ENST00000399429 NUMBP49757 651 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 ZNF143P52747 638 aaPredicted RBP9.36□□□□□ -0.91
COL28A1-201ENST00000399429 EPS8Q12929 822 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 ZNF460Q14592 562 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 SHROOM1Q2M3G4 852 aaPredicted RBP9.36□□□□□ -0.91
COL28A1-201ENST00000399429 CUZD1Q86UP6 607 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 FAM35AQ86V20 835 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 LILRB4Q8NHJ6 448 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 BEX2Q9BXY8 128 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 TRIM8Q9BZR9 551 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 ALG9Q9H6U8 611 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 SNTG2Q9NY99 539 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 TJP2Q9UDY2 1190 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 TSPAN16Q9UKR8 245 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 ANKRD6Q9Y2G4 727 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 RNF11Q9Y3C5 154 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 TRAF6Q9Y4K3 522 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 PPEF1O14829 653 aaPredicted RBP9.36□□□□□ -0.91
COL28A1-201ENST00000399429 RFPL2O75678 378 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 TXNL4AP83876 142 aaKnown RBP9.36□□□□□ -0.91
COL28A1-201ENST00000399429 CD83Q01151 205 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 TRAP1Q12931 704 aaKnown RBP9.36□□□□□ -0.91
COL28A1-201ENST00000399429 KCNJ11Q14654 390 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 PHKG1Q16816 387 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 MEP1AQ16819 746 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 GLYATQ6IB77 296 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 CHERPQ8IWX8 916 aaKnown RBP9.36□□□□□ -0.91
COL28A1-201ENST00000399429 ALDH16A1Q8IZ83 802 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 PLD6Q8N2A8 252 aaKnown RBP9.36□□□□□ -0.91
COL28A1-201ENST00000399429 LRRC71Q8N4P6 559 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 APPL2Q8NEU8 664 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 CDK5RAP1Q96SZ6 601 aaKnown RBP9.36□□□□□ -0.91
COL28A1-201ENST00000399429 HOPXQ9BPY8 73 aaPredicted RBP9.36□□□□□ -0.91
COL28A1-201ENST00000399429 NEURL2Q9BR09 285 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 APOBEC3GQ9HC16 384 aaKnown RBP9.36□□□□□ -0.91
COL28A1-201ENST00000399429 OLAHQ9NV23 265 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 RIC8BQ9NVN3 520 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 ADAM28Q9UKQ2 775 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 NOX1Q9Y5S8 564 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 CRYBG1Q9Y4K1 1723 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 ATRNL1Q5VV63 1379 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 ANKRD34BA5PLL1 514 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 E7ESA3 106 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 KCNQ2O43526 872 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 CST3P01034 146 aaPredicted RBP9.35□□□□□ -0.91
COL28A1-201ENST00000399429 ALDOAP04075 364 aaKnown RBP9.35□□□□□ -0.91
COL28A1-201ENST00000399429 IDH2P48735 452 aaKnown RBP9.35□□□□□ -0.91
COL28A1-201ENST00000399429 LIPEQ05469 1076 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 CSTF3Q12996 717 aaKnown RBP9.35□□□□□ -0.91
COL28A1-201ENST00000399429 BAATQ14032 418 aaPredicted RBP9.35□□□□□ -0.91
COL28A1-201ENST00000399429 GRM3Q14832 879 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 Q3C1V9 767 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 CERCAMQ5T4B2 595 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 GET4Q7L5D6 327 aaPredicted RBP9.35□□□□□ -0.91
COL28A1-201ENST00000399429 DSG4Q86SJ6 1040 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 LUZP2Q86TE4 346 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 SCML4Q8N228 414 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 FSTL5Q8N475 847 aaPredicted RBP9.35□□□□□ -0.91
COL28A1-201ENST00000399429 KIF12Q96FN5 646 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 HSFY1Q96LI6 401 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 ALG2Q9H553 416 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 RAPGEFL1Q9UHV5 662 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 FEM1BQ9UK73 627 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 SIGLEC1Q9BZZ2 1709 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 FAM159BA6NKW6 160 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 M0QYT0 321 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 EIF3FO00303 357 aaPredicted RBP9.35□□□□□ -0.91
COL28A1-201ENST00000399429 LINC00032P0C843 101 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 MYCLP1P12525 358 aaPredicted RBP9.35□□□□□ -0.91
COL28A1-201ENST00000399429 LBPP18428 481 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 PRKCHP24723 683 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 POU1F1P28069 291 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 NPY2RP49146 381 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 RHBDL3P58872 404 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 PPP4R4Q6NUP7 873 aa9.35□□□□□ -0.91
COL28A1-201ENST00000399429 ADHFE1Q8IWW8 467 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms