RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 QPCTQ16769 361 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 SEL1L3Q68CR1 1132 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 ARHGEF18Q6ZSZ5 1173 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 CTAGE6Q86UF2 777 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 SUGP1Q8IWZ8 645 aaKnown RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 CTAGE4Q8IX94 777 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 PGBD3Q8N328 593 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 CBARPQ8N350 705 aaPredicted RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 CCDC89Q8N998 374 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 KDM1BQ8NB78 822 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 SEC14L1Q92503 715 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 PRCCQ92733 491 aaPredicted RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 GDAP1L1Q96MZ0 367 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 NAP1L3Q99457 506 aaPredicted RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 FICDQ9BVA6 458 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 PCDH9Q9HC56 1237 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 BPIFA1Q9NP55 256 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 PCDH12Q9NPG4 1184 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 CHRAC1Q9NRG0 131 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 FBXL12Q9NXK8 326 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 DONSONQ9NYP3 566 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 RAPGEFL1Q9UHV5 662 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 ZFR2Q9UPR6 939 aaKnown RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 CA5BQ9Y2D0 317 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 ARL5AQ9Y689 179 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 EFCAB8A8MWE9 144 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 C10orf142B7Z368 130 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 CCDC188H7C350 402 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 AREL1O15033 823 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 HRO43593 1189 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 SYNCRIPO60506 623 aaKnown RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 RNASEH2AO75792 299 aaKnown RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 HEXIM1O94992 359 aaKnown RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 GSRP00390 522 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 C7P10643 843 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 MAOBP27338 520 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 ACTN2P35609 894 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 CXCL12P48061 93 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 CSNK1DP48730 415 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 FNTBP49356 437 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 CDKN1CP49918 316 aaPredicted RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 PLTPP55058 493 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 PPP2CBP62714 309 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 PPP2CAP67775 309 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 BCL2L1Q07817 233 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 PPP1R7Q15435 360 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 HIBCHQ6NVY1 386 aaPredicted RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 CRTC1Q6UUV9 634 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 RASSF3Q86WH2 238 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 C1orf210Q8IVY1 113 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 PLPP6Q8IY26 295 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 HDDC3Q8N4P3 179 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 LPCAT1Q8NF37 534 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 OR2T3Q8NH03 318 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 GANCQ8TET4 914 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 UCMAQ8WVF2 138 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 SIPA1Q96FS4 1042 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 FCRL3Q96P31 734 aaPredicted RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 NELL2Q99435 816 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 AGAP2Q99490 1192 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 WRAP53Q9BUR4 548 aaKnown RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 ABCG8Q9H221 673 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 SUDS3Q9H7L9 328 aaPredicted RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 SPATA6Q9NWH7 488 aaPredicted RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 ASIC3Q9UHC3 531 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 CD84Q9UIB8 345 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 TRHDEQ9UKU6 1024 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 CYP8B1Q9UNU6 501 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 AKAP13Q12802 2813 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 SPTBN2O15020 2390 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 TARSL2A2RTX5 802 aaKnown RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 GOLGA8KD6RF30 607 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 H0Y8X5 98 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 GOLGA8TH3BQL2 631 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 RAD51BO15315 384 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 MMP20O60882 483 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 AP2A1O95782 977 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 SERPINF2P08697 491 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 MAT2AP31153 395 aaKnown RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 ARSDP51689 593 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 CLCN5P51795 746 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 SESN2P58004 480 aaPredicted RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 RALGDSQ12967 914 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 POU6F1Q14863 301 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 MAP7D1Q3KQU3 841 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 ZNF805Q5CZA5 627 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 TEX35Q5T0J7 233 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 CFAP58Q5T655 872 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 IZUMO3Q5VZ72 239 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 SDE2Q6IQ49 451 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 LAYNQ6UX15 382 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 KIAA1324Q6UXG2 1013 aaKnown RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 HSD11B1LQ7Z5J1 315 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 SYNPOQ8N3V7 929 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 FBXL6Q8N531 539 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 ZNF557Q8N988 423 aaPredicted RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 TMIEQ8NEW7 156 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 KCNV2Q8TDN2 545 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 PTCD2Q8WV60 388 aaKnown RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 MAIP1Q8WWC4 291 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms