RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3A, Length 2,235 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 CENPFP49454 3210 aa22.26■■□□□ 1.15
UPF3A-201ENST00000351487 SYN3O14994 580 aa22.26■■□□□ 1.15
UPF3A-201ENST00000351487 RPL26P61254 145 aaKnown RBP22.26■■□□□ 1.15
UPF3A-201ENST00000351487 SREBF2Q12772 1141 aa22.26■■□□□ 1.15
UPF3A-201ENST00000351487 EFEMP1Q12805 493 aa22.26■■□□□ 1.15
UPF3A-201ENST00000351487 FBXL22Q6P050 247 aa22.26■■□□□ 1.15
UPF3A-201ENST00000351487 IGSF8Q969P0 613 aa22.26■■□□□ 1.15
UPF3A-201ENST00000351487 CDRT15Q96T59 188 aa22.26■■□□□ 1.15
UPF3A-201ENST00000351487 WDR41Q9HAD4 459 aa22.26■■□□□ 1.15
UPF3A-201ENST00000351487 EML4Q9HC35 981 aaKnown RBP22.26■■□□□ 1.15
UPF3A-201ENST00000351487 OLA1Q9NTK5 396 aaKnown RBP22.26■■□□□ 1.15
UPF3A-201ENST00000351487 GTSE1Q9NYZ3 720 aa22.26■■□□□ 1.15
UPF3A-201ENST00000351487 C6orf203Q9P0P8 240 aaPredicted RBP22.26■■□□□ 1.15
UPF3A-201ENST00000351487 LOC285095A0A1B0GVY8 99 aa22.25■■□□□ 1.15
UPF3A-201ENST00000351487 ATXN1LP0C7T5 689 aaKnown RBP22.25■■□□□ 1.15
UPF3A-201ENST00000351487 CCDC166P0CW27 439 aa22.25■■□□□ 1.15
UPF3A-201ENST00000351487 CCND3P30281 292 aaPredicted RBP22.25■■□□□ 1.15
UPF3A-201ENST00000351487 IL10RBQ08334 325 aa22.25■■□□□ 1.15
UPF3A-201ENST00000351487 ILF2Q12905 390 aaKnown RBP22.25■■□□□ 1.15
UPF3A-201ENST00000351487 SIRPB2Q5JXA9 342 aa22.25■■□□□ 1.15
UPF3A-201ENST00000351487 VARS2Q5ST30 1063 aaKnown RBP22.25■■□□□ 1.15
UPF3A-201ENST00000351487 SLC22A9Q8IVM8 553 aa22.25■■□□□ 1.15
UPF3A-201ENST00000351487 AFAP1L2Q8N4X5 818 aa22.25■■□□□ 1.15
UPF3A-201ENST00000351487 MARK4Q96L34 752 aa22.25■■□□□ 1.15
UPF3A-201ENST00000351487 MEAF6Q9HAF1 191 aa22.25■■□□□ 1.15
UPF3A-201ENST00000351487 UXTQ9UBK9 157 aaPredicted RBP22.25■■□□□ 1.15
UPF3A-201ENST00000351487 VWA7Q9Y334 891 aa22.25■■□□□ 1.15
UPF3A-201ENST00000351487 TCAF2A6NFQ2 919 aa22.25■■□□□ 1.15
UPF3A-201ENST00000351487 DRGXA6NNA5 263 aa22.25■■□□□ 1.15
UPF3A-201ENST00000351487 CA12O43570 354 aa22.25■■□□□ 1.15
UPF3A-201ENST00000351487 IGLV3-27P01718 113 aa22.25■■□□□ 1.15
UPF3A-201ENST00000351487 UBTFL6P0CB48 400 aaPredicted RBP22.25■■□□□ 1.15
UPF3A-201ENST00000351487 HNRNPLP14866 589 aaKnown RBP eCLIP22.25■■□□□ 1.15
UPF3A-201ENST00000351487 OR1G1P47890 313 aa22.25■■□□□ 1.15
UPF3A-201ENST00000351487 TRIP10Q15642 601 aa22.25■■□□□ 1.15
UPF3A-201ENST00000351487 PARP15Q460N3 678 aa22.25■■□□□ 1.15
UPF3A-201ENST00000351487 ACBD5Q5T8D3 534 aaPredicted RBP22.25■■□□□ 1.15
UPF3A-201ENST00000351487 OGFRL1Q5TC84 451 aaPredicted RBP22.25■■□□□ 1.15
UPF3A-201ENST00000351487 PGBD5Q8N414 524 aa22.25■■□□□ 1.15
UPF3A-201ENST00000351487 LINC01599Q8WXQ3 324 aa22.25■■□□□ 1.15
UPF3A-201ENST00000351487 PPP1R12CQ9BZL4 782 aa22.25■■□□□ 1.15
UPF3A-201ENST00000351487 MTPAPQ9NVV4 582 aaKnown RBP eCLIP22.25■■□□□ 1.15
UPF3A-201ENST00000351487 BCAP29Q9UHQ4 241 aa22.25■■□□□ 1.15
UPF3A-201ENST00000351487 LDB2O43679 373 aa22.24■■□□□ 1.15
UPF3A-201ENST00000351487 PENKP01210 267 aaPredicted RBP22.24■■□□□ 1.15
UPF3A-201ENST00000351487 UQCRBP14927 111 aa22.24■■□□□ 1.15
UPF3A-201ENST00000351487 ARSDP51689 593 aa22.24■■□□□ 1.15
UPF3A-201ENST00000351487 AQP4P55087 323 aa22.24■■□□□ 1.15
UPF3A-201ENST00000351487 INHBCP55103 352 aa22.24■■□□□ 1.15
UPF3A-201ENST00000351487 FAM189BP81408 668 aa22.24■■□□□ 1.15
UPF3A-201ENST00000351487 ACVR1Q04771 509 aa22.24■■□□□ 1.15
UPF3A-201ENST00000351487 LRRC36Q1X8D7 754 aa22.24■■□□□ 1.15
UPF3A-201ENST00000351487 PTAR1Q7Z6K3 402 aaPredicted RBP22.24■■□□□ 1.15
UPF3A-201ENST00000351487 PQLC1Q8N2U9 271 aa22.24■■□□□ 1.15
UPF3A-201ENST00000351487 SPPL2BQ8TCT7 592 aa22.24■■□□□ 1.15
UPF3A-201ENST00000351487 ANKRD49Q8WVL7 239 aa22.24■■□□□ 1.15
UPF3A-201ENST00000351487 PEX13Q92968 403 aa22.24■■□□□ 1.15
UPF3A-201ENST00000351487 YIPF3Q9GZM5 350 aa22.24■■□□□ 1.15
UPF3A-201ENST00000351487 CYP4F12Q9HCS2 524 aa22.24■■□□□ 1.15
UPF3A-201ENST00000351487 SPATS2LQ9NUQ6 558 aaKnown RBP22.24■■□□□ 1.15
UPF3A-201ENST00000351487 PRG3Q9Y2Y8 225 aaPredicted RBP22.24■■□□□ 1.15
UPF3A-201ENST00000351487 CHD5Q8TDI0 1954 aa22.24■■□□□ 1.15
UPF3A-201ENST00000351487 FAM155AB1AL88 458 aaPredicted RBP22.23■■□□□ 1.15
UPF3A-201ENST00000351487 RAMP2O60895 175 aa22.23■■□□□ 1.15
UPF3A-201ENST00000351487 S1PR4O95977 384 aa22.23■■□□□ 1.15
UPF3A-201ENST00000351487 XRCC1P18887 633 aaPredicted RBP22.23■■□□□ 1.15
UPF3A-201ENST00000351487 YWHAQP27348 245 aa22.23■■□□□ 1.15
UPF3A-201ENST00000351487 DPP6P42658 865 aa22.23■■□□□ 1.15
UPF3A-201ENST00000351487 PRAMEP78395 509 aa22.23■■□□□ 1.15
UPF3A-201ENST00000351487 PRKCZQ05513 592 aa22.23■■□□□ 1.15
UPF3A-201ENST00000351487 ART3Q13508 389 aa22.23■■□□□ 1.15
UPF3A-201ENST00000351487 CEACAM7Q14002 265 aa22.23■■□□□ 1.15
UPF3A-201ENST00000351487 FLOT2Q14254 428 aa22.23■■□□□ 1.15
UPF3A-201ENST00000351487 RAP1GAP2Q684P5 730 aa22.23■■□□□ 1.15
UPF3A-201ENST00000351487 ZFP1Q6P2D0 407 aa22.23■■□□□ 1.15
UPF3A-201ENST00000351487 TRAF7Q6Q0C0 670 aa22.23■■□□□ 1.15
UPF3A-201ENST00000351487 SDCCAG8Q86SQ7 713 aaPredicted RBP22.23■■□□□ 1.15
UPF3A-201ENST00000351487 RNF135Q8IUD6 432 aa22.23■■□□□ 1.15
UPF3A-201ENST00000351487 TMEM126BQ8IUX1 230 aa22.23■■□□□ 1.15
UPF3A-201ENST00000351487 TTC9BQ8N6N2 239 aa22.23■■□□□ 1.15
UPF3A-201ENST00000351487 HDAC10Q969S8 669 aa22.23■■□□□ 1.15
UPF3A-201ENST00000351487 SUDS3Q9H7L9 328 aaPredicted RBP22.23■■□□□ 1.15
UPF3A-201ENST00000351487 UTP6Q9NYH9 597 aaKnown RBP22.23■■□□□ 1.15
UPF3A-201ENST00000351487 PACSIN3Q9UKS6 424 aa22.23■■□□□ 1.15
UPF3A-201ENST00000351487 RNASEH1O60930 286 aaKnown RBP22.23■■□□□ 1.15
UPF3A-201ENST00000351487 PIM1P11309 404 aaPredicted RBP22.23■■□□□ 1.15
UPF3A-201ENST00000351487 CKBP12277 381 aa22.23■■□□□ 1.15
UPF3A-201ENST00000351487 ENO3P13929 434 aaPredicted RBP22.23■■□□□ 1.15
UPF3A-201ENST00000351487 SERINC3Q13530 473 aa22.23■■□□□ 1.15
UPF3A-201ENST00000351487 CUZD1Q86UP6 607 aa22.23■■□□□ 1.15
UPF3A-201ENST00000351487 FBXO32Q969P5 355 aa22.23■■□□□ 1.15
UPF3A-201ENST00000351487 BTBD9Q96Q07 612 aa22.23■■□□□ 1.15
UPF3A-201ENST00000351487 TRMOQ9BU70 441 aa22.23■■□□□ 1.15
UPF3A-201ENST00000351487 MARCH2Q9P0N8 246 aa22.23■■□□□ 1.15
UPF3A-201ENST00000351487 TBX18O95935 607 aa22.22■■□□□ 1.15
UPF3A-201ENST00000351487 CDKN2DP55273 166 aa22.22■■□□□ 1.15
UPF3A-201ENST00000351487 YBEYP58557 167 aaPredicted RBP22.22■■□□□ 1.15
UPF3A-201ENST00000351487 MRPL58Q14197 206 aaKnown RBP22.22■■□□□ 1.15
UPF3A-201ENST00000351487 BTG3Q14201 252 aaPredicted RBP22.22■■□□□ 1.15
UPF3A-201ENST00000351487 POLD3Q15054 466 aaPredicted RBP22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms