RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 KCNC1P48547 511 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 PSEN1P49768 467 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 ATN1P54259 1190 aaPredicted RBP10.41□□□□□ -0.74
LIMA1-201ENST00000341247 CCL23P55773 120 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 NKX3-2P78367 333 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 HTRA3P83110 453 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 FRG1Q14331 258 aaKnown RBP10.41□□□□□ -0.74
LIMA1-201ENST00000341247 LBRQ14739 615 aaKnown RBP10.41□□□□□ -0.74
LIMA1-201ENST00000341247 CLEC6AQ6EIG7 209 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 C16orf59Q7L2K0 433 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 CNTN4Q8IWV2 1026 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 ZNF683Q8IZ20 524 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 FAM156AQ8NDB6 213 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 FUBP3Q96I24 572 aaKnown RBP eCLIP10.41□□□□□ -0.74
LIMA1-201ENST00000341247 C1orf74Q96LT6 269 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 IGSF5Q9NSI5 407 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 TMEM248Q9NWD8 314 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 ANGPTL2Q9UKU9 493 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 TARM1B6A8C7 271 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 ENPP3O14638 875 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 CSPG5O95196 566 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 VNN2O95498 520 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 CRABP2P29373 138 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 HADHAP40939 763 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 SCNN1BP51168 640 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 PPP1R3AQ16821 1122 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 FAM117BQ6P1L5 589 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 DEFB128Q7Z7B8 93 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 MYLK4Q86YV6 388 aaPredicted RBP10.4□□□□□ -0.74
LIMA1-201ENST00000341247 DENND1CQ8IV53 801 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 ARRDC2Q8TBH0 407 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 CDRT15Q96T59 188 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 NPAS2Q99743 824 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 MARCH5Q9NX47 278 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 SMPD4Q9NXE4 827 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 NCKIPSDQ9NZQ3 722 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.4□□□□□ -0.74
LIMA1-201ENST00000341247 POMPQ9Y244 141 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 LRRC14BA6NHZ5 514 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 SUPT7LO94864 414 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 DNAJB2P25686 324 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 CST5P28325 142 aaPredicted RBP10.4□□□□□ -0.74
LIMA1-201ENST00000341247 SLC6A4P31645 630 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 NDST2P52849 883 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 NME5P56597 212 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 CCNIQ14094 377 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 TRIP4Q15650 581 aaPredicted RBP10.4□□□□□ -0.74
LIMA1-201ENST00000341247 FAM83EQ2M2I3 478 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 TMEM207Q6UWW9 146 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 CILP2Q8IUL8 1156 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 MIEF2Q96C03 454 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 SPDL1Q96EA4 605 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 C1orf21Q9H246 121 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 SRRDQ9UH36 339 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 VWA7Q9Y334 891 aa10.4□□□□□ -0.74
LIMA1-201ENST00000341247 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.4□□□□□ -0.74
LIMA1-201ENST00000341247 PRRC2BQ5JSZ5 2229 aaKnown RBP10.4□□□□□ -0.75
LIMA1-201ENST00000341247 ANKRD12Q6UB98 2062 aa10.4□□□□□ -0.75
LIMA1-201ENST00000341247 PQBP1O60828 265 aaKnown RBP10.4□□□□□ -0.75
LIMA1-201ENST00000341247 TACR2P21452 398 aa10.4□□□□□ -0.75
LIMA1-201ENST00000341247 POU4F1Q01851 419 aa10.4□□□□□ -0.75
LIMA1-201ENST00000341247 GEN1Q17RS7 908 aa10.4□□□□□ -0.75
LIMA1-201ENST00000341247 MSANTD2Q6P1R3 559 aa10.4□□□□□ -0.75
LIMA1-201ENST00000341247 TMEM154Q6P9G4 183 aa10.4□□□□□ -0.75
LIMA1-201ENST00000341247 GK5Q6ZS86 529 aa10.4□□□□□ -0.75
LIMA1-201ENST00000341247 MAB21L3Q8N8X9 362 aa10.4□□□□□ -0.75
LIMA1-201ENST00000341247 BCL7CQ8WUZ0 217 aaPredicted RBP10.4□□□□□ -0.75
LIMA1-201ENST00000341247 RMDN1Q96DB5 314 aa10.4□□□□□ -0.75
LIMA1-201ENST00000341247 MRPL57Q9BQC6 102 aaKnown RBP10.4□□□□□ -0.75
LIMA1-201ENST00000341247 PRKD2Q9BZL6 878 aa10.4□□□□□ -0.75
LIMA1-201ENST00000341247 TMEM161AQ9NX61 479 aa10.4□□□□□ -0.75
LIMA1-201ENST00000341247 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.4□□□□□ -0.75
LIMA1-201ENST00000341247 DLGAP2Q9P1A6 1054 aa10.4□□□□□ -0.75
LIMA1-201ENST00000341247 ZFP37Q9Y6Q3 630 aaPredicted RBP10.4□□□□□ -0.75
LIMA1-201ENST00000341247 A8MT66 165 aa10.39□□□□□ -0.75
LIMA1-201ENST00000341247 F5H5T6 163 aa10.39□□□□□ -0.75
LIMA1-201ENST00000341247 F8W8V4 182 aa10.39□□□□□ -0.75
LIMA1-201ENST00000341247 PPP6CO00743 305 aa10.39□□□□□ -0.75
LIMA1-201ENST00000341247 GOT2P00505 430 aaKnown RBP10.39□□□□□ -0.75
LIMA1-201ENST00000341247 INHAP05111 366 aa10.39□□□□□ -0.75
LIMA1-201ENST00000341247 RGRP47804 291 aa10.39□□□□□ -0.75
LIMA1-201ENST00000341247 CYLC2Q14093 348 aaPredicted RBP10.39□□□□□ -0.75
LIMA1-201ENST00000341247 LHX8Q68G74 356 aa10.39□□□□□ -0.75
LIMA1-201ENST00000341247 LAYNQ6UX15 382 aa10.39□□□□□ -0.75
LIMA1-201ENST00000341247 RNF111Q6ZNA4 994 aa10.39□□□□□ -0.75
LIMA1-201ENST00000341247 TMCO2Q7Z6W1 182 aaPredicted RBP10.39□□□□□ -0.75
LIMA1-201ENST00000341247 ARHGAP18Q8N392 663 aa10.39□□□□□ -0.75
LIMA1-201ENST00000341247 KDM1BQ8NB78 822 aa10.39□□□□□ -0.75
LIMA1-201ENST00000341247 ZNF212Q9UDV6 495 aa10.39□□□□□ -0.75
LIMA1-201ENST00000341247 FAM50BQ9Y247 325 aa10.39□□□□□ -0.75
LIMA1-201ENST00000341247 SYN3O14994 580 aa10.39□□□□□ -0.75
LIMA1-201ENST00000341247 SIX3O95343 332 aaPredicted RBP10.39□□□□□ -0.75
LIMA1-201ENST00000341247 ATP5BP06576 529 aaKnown RBP10.39□□□□□ -0.75
LIMA1-201ENST00000341247 LTA4HP09960 611 aaKnown RBP10.39□□□□□ -0.75
LIMA1-201ENST00000341247 ZCCHC18P0CG32 403 aa10.39□□□□□ -0.75
LIMA1-201ENST00000341247 MYL4P12829 197 aa10.39□□□□□ -0.75
LIMA1-201ENST00000341247 ATF6P18850 670 aa10.39□□□□□ -0.75
LIMA1-201ENST00000341247 ATP5F1P24539 256 aaPredicted RBP10.39□□□□□ -0.75
LIMA1-201ENST00000341247 PMLP29590 882 aa10.39□□□□□ -0.75
LIMA1-201ENST00000341247 OR1D2P34982 312 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms