RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 LRRC8BQ6P9F7 803 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 ARID3BQ8IVW6 561 aaPredicted RBP10.21□□□□□ -0.77
USP54-201ENST00000339859 TWNKQ96RR1 684 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 SDCBP2Q9H190 292 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 MIEF1Q9NQG6 463 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 CNPP09543 421 aaKnown RBP10.21□□□□□ -0.77
USP54-201ENST00000339859 LTA4HP09960 611 aaKnown RBP10.21□□□□□ -0.77
USP54-201ENST00000339859 PSMC3P17980 439 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 DSC2Q02487 901 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 DPYSL2Q16555 572 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 ARMC5Q96C12 935 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 TUBGCP3Q96CW5 907 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 RPL10LQ96L21 214 aaKnown RBP10.21□□□□□ -0.77
USP54-201ENST00000339859 TMEM209Q96SK2 561 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 RBBP8Q99708 897 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 SPHK2Q9NRA0 654 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 TMEM114B3SHH9 223 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 DGKIO75912 1065 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 USP1O94782 785 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 ARSIQ5FYB1 569 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 SPDYCQ5MJ68 293 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 SYPL2Q5VXT5 272 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 HGSNATQ68CP4 663 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 C16orf89Q6UX73 402 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 MILR1Q7Z6M3 343 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 PYROXD2Q8N2H3 581 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 PLD5Q8N7P1 536 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 STAG3L4Q8TBR4 150 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 STARD8Q92502 1023 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 ZIM3Q96PE6 472 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 SMG9Q9H0W8 520 aaKnown RBP10.21□□□□□ -0.77
USP54-201ENST00000339859 PAK6Q9NQU5 681 aaPredicted RBP10.21□□□□□ -0.77
USP54-201ENST00000339859 FBXO6Q9NRD1 293 aaPredicted RBP10.21□□□□□ -0.77
USP54-201ENST00000339859 SYBUQ9NX95 663 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 BAIAP2L1Q9UHR4 511 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 CDH7Q9ULB5 785 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 RIPK2O43353 540 aa10.21□□□□□ -0.78
USP54-201ENST00000339859 BUD23O43709 281 aaKnown RBP10.21□□□□□ -0.78
USP54-201ENST00000339859 VPS4BO75351 444 aa10.21□□□□□ -0.78
USP54-201ENST00000339859 KLF8O95600 359 aaPredicted RBP10.21□□□□□ -0.78
USP54-201ENST00000339859 FGFR3P22607 806 aa10.21□□□□□ -0.78
USP54-201ENST00000339859 GRK2P25098 689 aa10.21□□□□□ -0.78
USP54-201ENST00000339859 OXTRP30559 389 aa10.21□□□□□ -0.78
USP54-201ENST00000339859 GABRB2P47870 512 aa10.21□□□□□ -0.78
USP54-201ENST00000339859 GALNTL6Q49A17 601 aa10.21□□□□□ -0.78
USP54-201ENST00000339859 BRAT1Q6PJG6 821 aa10.21□□□□□ -0.78
USP54-201ENST00000339859 SPATA21Q7Z572 469 aa10.21□□□□□ -0.78
USP54-201ENST00000339859 EPS8L3Q8TE67 593 aaKnown RBP10.21□□□□□ -0.78
USP54-201ENST00000339859 CYB5D2Q8WUJ1 264 aa10.21□□□□□ -0.78
USP54-201ENST00000339859 CAPN10Q9HC96 672 aa10.21□□□□□ -0.78
USP54-201ENST00000339859 NINJ2Q9NZG7 142 aa10.21□□□□□ -0.78
USP54-201ENST00000339859 HS3ST4Q9Y661 456 aa10.21□□□□□ -0.78
USP54-201ENST00000339859 PTGESO14684 152 aa10.21□□□□□ -0.78
USP54-201ENST00000339859 ZSCAN5DPP0CG00 497 aa10.21□□□□□ -0.78
USP54-201ENST00000339859 FBXL22Q6P050 247 aa10.21□□□□□ -0.78
USP54-201ENST00000339859 WDR93Q6P2C0 686 aa10.21□□□□□ -0.78
USP54-201ENST00000339859 B3GNT9Q6UX72 402 aa10.21□□□□□ -0.78
USP54-201ENST00000339859 TCEAL8Q8IYN2 117 aa10.21□□□□□ -0.78
USP54-201ENST00000339859 CAPN7Q9Y6W3 813 aa10.21□□□□□ -0.78
USP54-201ENST00000339859 A0A096LPK6 155 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 ISM1B1AKI9 464 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 TNFP01375 233 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 TLX1P31314 330 aaPredicted RBP10.2□□□□□ -0.78
USP54-201ENST00000339859 CDKN2BP42772 138 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 HADHBP55084 474 aaKnown RBP10.2□□□□□ -0.78
USP54-201ENST00000339859 CYB5D1Q6P9G0 228 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 TPRG1Q6ZUI0 275 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 OR10G6Q8NH81 332 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 ASZ1Q8WWH4 475 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 STX18Q9P2W9 335 aaKnown RBP10.2□□□□□ -0.78
USP54-201ENST00000339859 ASF1AQ9Y294 204 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 KDELR3O43731 214 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 GCKP35557 465 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 GRIA2P42262 883 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 KCNQ1P51787 676 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 PLOD1Q02809 727 aaPredicted RBP10.2□□□□□ -0.78
USP54-201ENST00000339859 RHBDF2Q6PJF5 856 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 CERS6Q6ZMG9 384 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 NLRP14Q86W24 1093 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 AVL9Q8NBF6 648 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 OR10T2Q8NGX3 314 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 NPHS2Q9NP85 383 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 GDE1Q9NZC3 331 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 ECM29Q5VYK3 1845 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 HNRNPCL1O60812 293 aaKnown RBP10.2□□□□□ -0.78
USP54-201ENST00000339859 PIRTP0C851 137 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 RPS24P62847 133 aaKnown RBP10.2□□□□□ -0.78
USP54-201ENST00000339859 ABRQ12979 859 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 BMPR2Q13873 1038 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 TAF5Q15542 800 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 TAF1AQ15573 450 aaPredicted RBP10.2□□□□□ -0.78
USP54-201ENST00000339859 FOXR1Q6PIV2 292 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 LPCAT2Q7L5N7 544 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 SUV39H2Q9H5I1 410 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 FBRSQ9HAH7 460 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 TCRBV21S2A2A0A5A6 115 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 LMNAP02545 664 aaKnown RBP10.2□□□□□ -0.78
USP54-201ENST00000339859 MLNP12872 115 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 MARCKSL1P49006 195 aa10.2□□□□□ -0.78
USP54-201ENST00000339859 CDK7P50613 346 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms